Flavobacterium dauae: NU10_13890
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Entry
NU10_13890 CDS
T09251
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
fda
Flavobacterium dauae
Pathway
fda03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fda00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NU10_13890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fda03019
]
NU10_13890
Enzymes [BR:
fda01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NU10_13890
Messenger RNA biogenesis [BR:
fda03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NU10_13890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
AAA_19
CMS1
CheB_methylest
Flavi_DEAD
UvrD-helicase
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
WLD23777
LinkDB
All DBs
Position
2909835..2910971
Genome browser
AA seq
378 aa
AA seq
DB search
MYFKELNLIPPIIKAINKAGYEKPTEIQYQSIPHILKGNDIIGCAQTGTGKTASFAIPIL
QLLQHHDVAHKGIRTLILTPTRELAIQISENFKTYGAFLSLTHTAIYGGVPQNKQIALIN
KGVTILIATPGRLLDLISQGCVNISKIEILVLDEADRMLDMGFVNDVKKILKKVPEKRQT
LFFSATMPLDIRNFAQTILKHPKEINVTPVSSTAQTVQQSVYFVEKDEKLNLLVSILEDQ
SIKRSLIFSRTKHGADKLVRKLTKAGISAAAIHGNKSQNARQKALDDFKKSTIRILIATD
IAARGIDIDELPHVINYELPNVPETYVHRIGRTGRAGTSGVAVSFCGTDEKKDLNNIQKL
IGFKIPVVTKKQENISSK
NT seq
1137 nt
NT seq
+upstream
nt +downstream
nt
atgtattttaaagaattaaaccttataccgcctataattaaggcgataaacaaagccggg
tacgaaaaacccacagaaatacagtaccaatcaataccccatatattaaagggaaacgat
attataggatgtgcacaaacaggcacaggtaaaacggcatcgtttgccatacccatcctg
caattattgcaacaccatgatgttgcacacaaaggcatccgtactttgatattaaccccc
acaagagaacttgccatacagattagtgaaaattttaaaacgtatggtgcatttttatcc
ttaacccatacggcgatttacggcggcgttccgcaaaacaagcagatagcccttattaac
aaaggtgttactattttaatagcaacaccaggcaggctgttagaccttataagtcaggga
tgtgtcaacatttcaaaaattgagatactggtacttgacgaagccgaccgtatgctggat
atgggttttgtgaatgatgtaaaaaagatattgaaaaaggtacccgaaaaaagacaaaca
ctattcttttcagctaccatgccgttagacatcaggaattttgcacaaaccatattaaaa
catcctaaagaaatcaacgttacacctgtttcttcaacagctcaaacggtacagcaatcg
gtctattttgttgaaaaagacgaaaaactaaacttacttgtaagcatcttagaagatcag
tctatcaaaagatcactaatcttttcacgtaccaagcacggagccgacaaattggtaaga
aaactgaccaaagccggtatatctgcagcagccatccacggtaacaaatcacaaaacgcc
cggcaaaaagcgttggatgatttcaaaaaaagtactatccggattttaatagctaccgat
attgctgcaagaggtattgacattgacgagttgccacacgttataaattacgaattaccc
aatgtgcccgaaacctatgttcacagaatagggagaaccggcagagcaggaacatcaggt
gttgccgtttcattttgtggtaccgacgaaaaaaaagaccttaacaatatacaaaaactg
ataggctttaaaattccggttgtgacaaaaaaacaagaaaacatatcatctaaataa
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