Faecalibacterium duncaniae JCM 31915: GXM22_02430
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Entry
GXM22_02430 CDS
T08154
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
fdu
Faecalibacterium duncaniae JCM 31915
Brite
KEGG Orthology (KO) [BR:
fdu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
fdu03009
]
GXM22_02430 (rlmD)
Enzymes [BR:
fdu01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
GXM22_02430 (rlmD)
Ribosome biogenesis [BR:
fdu03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
GXM22_02430 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Cons_hypoth95
Methyltransf_31
MTS
Methyltransf_25
TRM5-TYW2_MTfase
Methyltransf_15
PrmA
N6_N4_Mtase
Methyltransf_4
RrnaAD
UPF0020
Motif
Other DBs
NCBI-ProteinID:
QIA42034
LinkDB
All DBs
Position
524134..525300
Genome browser
AA seq
388 aa
AA seq
DB search
MECRLKAKKCGGCPMLGLDYAEQLKQKEAAVRKLVGKYGPVAPIRGAENPCHYRNKVIST
FAAGPGGKLVSGIYAAGTHKVLPVESCLLQDEVLDTVMQAVRAAASTCRYQPYNEDKGTG
LLRHCLLRRGVVSGQVMVVLVTAQPVLPGAKNFVRALLAEAEKRHVPVTTVVQNYNPRRT
SVVLGEEEKVLYGKGFILDTLCGKTYALSPRSFYQINHDQTEVLYGLAVEAARLTGKEVV
LDAYCGIGTIGLTASGRAKQVVGVELNRDAVRDAIGNARHNDVKNARFFAADATQWITEA
AAAGQRADVIFMDPPREGSTPQFIESVARMAPKRVVYVSCNPETMARDLALLTAKGYRAE
GFTPVDLFPQTAHCEVVCALTRSQKSKG
NT seq
1167 nt
NT seq
+upstream
nt +downstream
nt
atggagtgcagattgaaagcaaaaaaatgcggcggctgtccgatgctggggctggattat
gccgagcagctcaaacaaaaagaagccgctgtccgtaagctggtggggaaatacggcccg
gtggctcccatccggggcgcggaaaacccctgccattaccgcaataaggtgatctctacc
tttgcagcgggccccggcgggaaactggtgtccggcatctatgcggcaggcacgcataaa
gtgctgcctgtggaaagctgcctgctgcaggacgaagtgctggacaccgtgatgcaggcg
gtgcgggcggcggccagcacctgccgttaccagccttacaatgaggacaagggcaccggc
ctgctccgccactgcctgctgcggcgcggcgtggtgtccgggcaggtgatggtggtattg
gtgaccgcccagccggttctgcccggggcaaaaaactttgtccgtgctctgctggccgaa
gccgaaaagcgccatgtccccgtgaccaccgtggtgcagaactacaacccccgccgcacc
agcgtggtgctgggcgaagaggaaaaggtgctctacggcaagggcttcattctggatacc
ctctgcggcaagacctatgccctgagcccccggagtttctaccagatcaaccatgaccag
accgaggtgctgtatggtctggctgtggaagccgcccgcctgaccggcaaagaggtggtg
ctggatgcctactgcggcattggcaccatcggtctgaccgccagcggcagggcaaagcag
gtggtgggcgtggagctgaaccgggacgctgtccgggatgccatcggcaacgcaaggcac
aacgacgtgaaaaacgcccgcttctttgccgccgatgccacccagtggatcacagaagcg
gcggccgccgggcagagagcagatgtcattttcatggacccgccccgcgaaggctccacc
ccccagttcatcgagagcgtggcccgcatggcccccaaacgggtggtctatgtcagctgc
aaccccgagactatggcccgtgatcttgccctcctgaccgccaaaggctaccgcgccgag
ggctttacccctgttgatctcttcccccagaccgcccattgtgaggtggtctgcgcgctg
accagatcacagaagtccaaagggtga
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