Faecalibacterium duncaniae JCM 31915: GXM22_02835
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Entry
GXM22_02835 CDS
T08154
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
fdu
Faecalibacterium duncaniae JCM 31915
Pathway
fdu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fdu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GXM22_02835
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fdu03019
]
GXM22_02835
03009 Ribosome biogenesis [BR:
fdu03009
]
GXM22_02835
Enzymes [BR:
fdu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GXM22_02835
Messenger RNA biogenesis [BR:
fdu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GXM22_02835
Ribosome biogenesis [BR:
fdu03009
]
Prokaryotic type
rRNA helicases
GXM22_02835
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_30
Cas3-like_C_2
Helicase_RecD
AAA_19
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QIA42107
LinkDB
All DBs
Position
604274..605461
Genome browser
AA seq
395 aa
AA seq
DB search
MLYSELQCSEAIHKAVERMGFAEMTEIQEKTIPVMLAGRDVIAKAPTGTGKTCAFGIPVA
EHIDPEKKYPQAVIMAPTRELAQQIAEELTELTYFMPEVQVACVYGGANMEKQARRLAEG
CQIVVATPGRLMDHYKHHSIDLAHVTQVVLDEADEMLNMGFYKDVRHIIELMKARKSLSM
FSATISREVMDIGWLYQNNAEEITVQPREESQPKITQYMLETSGRNKLSDLAQIIIGEGY
KRVMVFCDTKFNTATLANQLARLGFSVDCLHGDLSQKERNQIMQNFRDGRLAILVATDVA
ARGIDVSDVDAVINYDVPGDNEHYTHRIGRTGRAKKEGVSYLFYVPEEKKRVQELLRLTR
NTDLCTPVHFDFNHERIVVEKKQDNADRFQIKCYF
NT seq
1188 nt
NT seq
+upstream
nt +downstream
nt
atgctttacagtgagttgcagtgcagtgaagccatccacaaggccgtggagcggatgggg
tttgcagagatgacggaaattcaggaaaagaccatccctgtgatgctggcaggccgggat
gtgatcgccaaggcccccaccggcaccggcaagacctgtgccttcggcatcccggtggcg
gaacatatcgacccggaaaaaaagtacccgcaggctgtgatcatggcccccacccgggag
cttgcccagcagatcgccgaggagctgaccgagctgacctactttatgcctgaggtgcag
gtggcctgcgtgtacggcggtgccaacatggaaaagcaggccaggcgtttggcagagggc
tgccagatcgtggtggccaccccgggccgcctgatggaccactataagcaccacagcatc
gatctggcccatgtgacccaggtggtgctggacgaggccgatgagatgctgaacatgggc
ttttataaggacgtgcggcatatcattgagctgatgaaggcccgcaaaagcctgtccatg
ttctccgccaccatcagccgcgaggtcatggacatcggctggctgtatcagaacaacgcc
gaggagatcaccgttcagcccagggaggagagccagcccaagatcacccagtacatgctg
gagacctccggccgcaacaagctgtccgacctggcccagatcatcattggcgagggctac
aagcgggtcatggtgttctgcgataccaagttcaataccgccaccctggccaaccagctg
gcccgtctgggcttctctgtggactgcctccacggcgacctctcccagaaggaacgcaac
cagatcatgcagaacttccgggacggcaggctggccatccttgtggccaccgatgtggct
gcccgcggcatcgatgtctcggatgtggatgcggtcatcaactacgatgtccccggcgac
aacgaacattacacccaccggatcggccgcaccggccgcgccaaaaaggagggcgtgagc
tatctgttctatgtgcccgaggagaaaaagcgggtgcaggagcttctccgcctgacccgc
aacaccgacctgtgtaccccggtccactttgatttcaaccatgagcgcatcgtggtggag
aaaaagcaggacaatgccgaccggttccagatcaagtgctatttctaa
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