Faecalibacterium duncaniae JCM 31915: GXM22_08975
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Entry
GXM22_08975 CDS
T08154
Name
(GenBank) ATP-dependent RecD-like DNA helicase
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
fdu
Faecalibacterium duncaniae JCM 31915
Pathway
fdu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
fdu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
GXM22_08975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fdu03400
]
GXM22_08975
Enzymes [BR:
fdu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
GXM22_08975
DNA repair and recombination proteins [BR:
fdu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
GXM22_08975
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
HHH_RecD2
OB_YrrC
SH3_13
UvrD_C_2
AAA_11
Viral_helicase1
HHH_5
AAA_22
PIF1
Helicase_RecD
T2SSE
UvrD-helicase
nSTAND3
PhoH
AAA_16
DEAD
NPHP3_N
TrwB_AAD_bind
AAA
MeaB
NTPase_1
ABC_tran
UvrD_C
AAA_28
RsgA_GTPase
SLFN-g3_helicase
RecD_N
SRP54
AAA_5
AAA_29
TsaE
FtsK_SpoIIIE
KAP_NTPase
AAA_24
CbiA
Motif
Other DBs
NCBI-ProteinID:
QIA43189
LinkDB
All DBs
Position
complement(1853920..1856142)
Genome browser
AA seq
740 aa
AA seq
DB search
MRSMELEQIEGTVEDIIYENPDNGYTVFEISGGGTVTVVCGIVGELHAGESVVCRGKYEN
HATYGRQFHAQECETDMPKDLEAVYAFLASGSLPYIGARTANKIIDKFGAAALEVIANDP
AQLTLIPGISADKADRIQQEFKRMFGMRELIAYLAQFEISPRRAMEVFRVFGPSAMQAIS
QNPYLLCGEPLQLDFRHADSIAQYYHMEGDCTQRLEAALLRTLRHNAGNGHTCLPRTQLL
DTASHFIQQPPEKLARALDHCIETGQLGVKMLEAVPYIYLPDLLEAEQAIADRLALLAKR
EKQTVRDLDKNIQVLELTQGFAYAPLQREAIRKAMTENCLVLTGGPGTGKTTTVNAILQL
LEHQADRVALCAPTGRAAKRLSELTGRKASTIHRLLEVDYSGGVVSFIHNDKNLLKCDVV
ILDEMSMVDVKLFQALIAALRYSCRIIMVGDADQLPSVGPGNILGEVIRSGLVPTVCLNE
IFRQAKRSLIVENAHHIISSEPLQKGGKADDFFFLESDGDAAQKLVCDLVTTRLPRSYGF
DPVRDIQVLCPTKLGPTGTQALNVELQNLLNPEQKGKPQLQSASRVFRVGDKVMQVRNNY
EIVWNRIGGEQGVGAYNGDIGIVESINMRDRSMVVRMDDRRLLYPAENLNELEIAYAITV
HKSQGSEFPAVVLPVAQVPPRLCYRNLFYTGVTRARKLCIVAGRRDVVNRMMSNVRQNLR
YSGLCELLKENLPPEQMAAE
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
gtgaggagcatggagctggaacagatcgagggaacggtggaggacattatctacgagaac
ccggacaacggctacacggtgtttgaaatttccggcggcggcacggtcaccgtggtgtgc
gggatcgtgggcgagctccatgcgggcgagagcgtggtctgccgcggtaaatatgagaac
cacgccacctatggccgccagttccacgcccaggagtgcgagaccgatatgccgaaggat
ctggaagcggtgtacgccttccttgccagcggctccctgccttatatcggggcgcgcacg
gccaataagatcatcgacaaattcggcgcggcggcgctggaggtgatcgccaacgacccc
gcccagctcaccctgatccccggcatctcggcggacaaggccgaccgcatccagcaggag
ttcaagcggatgttcggaatgcgggaactgatcgcctatctggcgcagttcgagatcagc
ccccgccgcgccatggaggtgttccgcgtctttggccccagtgccatgcaggccatctcc
cagaacccttatctgctctgtggggaacccctgcagctggatttccgccatgccgacagc
attgcacagtattaccacatggaaggggactgcacccagcggctggaagcagcgcttctc
cgcaccctgcgccataacgcgggcaacggtcacacctgcctgccccgtacgcagctgctg
gacacggcatcccacttcatccagcagccgcccgaaaagctggcccgtgcgctggaccac
tgcattgagaccgggcagcttggcgtaaagatgctggaggcggtgccgtatatctatctg
cctgacctgctggaagcagaacaggccattgccgaccggctggccctgctggcgaagcgg
gaaaagcagacggtgcgggaccttgataaaaacatccaggtgctggagctgacccagggg
tttgcctatgcgcccctgcagcgggaagccatccgcaaggccatgaccgaaaactgcctt
gtgctgaccggcggccccggcaccggtaagaccactacggtcaacgccatcctgcagctg
ctggagcatcaggcagaccgggtggcgctttgtgcccccacgggccgtgcggccaaacgg
ctgagtgaactgaccggccgcaaggcctctaccatccaccgcctgctggaggtggactac
tccggcggcgtggtcagcttcatccacaatgacaagaacctgctcaaatgcgatgtggtc
attctggatgagatgagtatggtggatgtgaagctgtttcaggcgctcattgcagccctg
cggtacagctgccgcattattatggtgggcgatgccgaccagctgcccagcgtggggccc
ggcaacattctgggcgaggtcatccgctccgggctggtgcccaccgtctgcctgaacgag
atcttccggcaggctaaacgcagccttattgtggagaacgcccaccacatcatcagcagt
gagccgctgcagaagggcggtaaggcagacgatttcttctttctggaatcggacggcgat
gcggcacagaaactggtgtgcgatcttgtcaccacccgtctgccccggagctatgggttt
gaccctgtccgggatatccaggtgctctgccccaccaagctgggacccaccggtacccag
gcgctgaatgtggagctgcagaacctgctcaacccggagcagaagggcaaaccccagctc
caaagcgcctcacgggtgttccgggtgggcgataaggtgatgcaggtgcggaacaactac
gagatcgtctggaaccgcattggcggggagcagggcgtgggagcctataacggtgatatc
ggcattgtggaatccatcaacatgcgcgaccgctccatggtggtgcggatggatgaccgc
cgcctgctctacccggcggaaaacctgaacgagctggagatcgcctacgccatcacggtg
cacaagagccagggcagcgagttcccggcggtggtgctgccggtggcgcaggtgccgcca
aggctctgctaccgcaacctcttctacaccggcgtgacccgcgcccgcaaattgtgcatc
gtggccgggcggcgggatgtggtgaaccggatgatgtccaatgtccggcagaacctgcgg
tacagcggcctgtgcgaattgctgaaagagaatctgccgccggaacagatggcggcggaa
taa
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