Faecalibacterium duncaniae JCM 31915: GXM22_09470
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Entry
GXM22_09470 CDS
T08154
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
fdu
Faecalibacterium duncaniae JCM 31915
Pathway
fdu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fdu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GXM22_09470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fdu03019
]
GXM22_09470
Messenger RNA biogenesis [BR:
fdu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GXM22_09470
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
QIA43272
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Position
complement(1950713..1952515)
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AA seq
600 aa
AA seq
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MAQVKEQNPAQAQNNPNRNSESGGEKRTRTRRPYYNRRPRRAQQPKEAAVPIHIYPLGGL
GEVGKNMTVYECNGDMIIVDCGLVFPDSEMYGVDMVIPDFTFVVQNKDKIKGLLITHGHE
DHIGSIPYLLQKFDLPIYGTRLTCGLIRNKLEEFGLAGKTKFVEITPKQKIKLGCFTVEP
IHVNHSIPDSVAFAIDSPAGTIIQTGDFKIDYTPLACGVTDLTTLSEYGQKGVLALLSDS
TNAERPGFTATEQKVAAGVRNLFARARNKRIIIATFASNIYRVQQIIDLAVEDGRKVAFS
GRSMVNNTAMAQELGYMHIPEGTLISVDELNQYPPEQVVLITTGSQGEPLSALSRMASCS
HRQVRVGPGDFIIISANPIPGNEKSVTKIVNGLLLLGAEVIYESMYDVHVSGHACQEEQK
LMLTLTRPKYFLPVHGEYKQLKKHALTAASLGIPTSNILIAENGSNVILSRDEIKLGEPV
TAGAVMVDGLGVGDVGNVVLRDRKHLSEDGLVIIVATVDSKTGKVLAGPDLVSRGFVYVR
ENESLMDGAQSIVENALDRCVEEHVRDWNSVKTRVREALSSYIYRRTKRSPMILPILMEV
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atggcacaggtcaaagaacagaacccggctcaggctcagaacaatccgaacagaaacagt
gaatccggcggggaaaagcgtacccgcacccgccgcccttattataaccggcggccccgc
cgcgcacagcagcccaaggaggccgctgtgcccatccacatctacccgctgggcggtctg
ggcgaagtgggcaagaacatgaccgtgtatgagtgcaacggggatatgatcattgtggac
tgcggccttgtattcccggacagtgagatgtacggcgtggacatggtcatccccgacttt
acctttgtggtgcagaataaggacaagatcaagggactgctcatcacccacggccacgaa
gaccacatcggcagcattccctacctgctgcagaagtttgatctgcccatctacggcacc
cggctgacctgcggcctcatccggaacaagctggaggagtttggcctggcaggcaagacc
aagttcgtggagatcacccccaaacagaagatcaagctgggctgctttaccgtggagccc
atccatgtcaaccactccatccccgattccgtggcctttgccattgacagccccgccgga
acgatcatccagaccggcgacttcaagatcgattacaccccgctggcctgcggcgtgacc
gacctgaccaccctttcggagtatggtcagaagggtgttctggctctgctgagcgattcc
accaacgccgagcgcccgggctttaccgccacggagcagaaggtggccgccggtgtccgc
aacctgtttgcccgtgcccggaacaagcgcatcatcattgcgacctttgcgtccaatatc
taccgcgtccagcagatcattgatctggccgtggaggatggccgcaaggtggcgttcagc
ggccgcagcatggtcaataacactgccatggcgcaggagctgggctatatgcacatcccc
gagggcacccttatcagtgtggatgagctgaaccagtacccgccggagcaggtggtgctg
atcaccaccggcagccagggcgagcccctgagcgccctttcccgcatggcctcctgcagc
caccgccaggtgcgggtgggccccggcgacttcatcatcatctccgccaaccccattccc
ggcaacgagaagagcgtgaccaagatcgtcaacggtctgctcctgctgggtgcggaggtc
atctacgagagcatgtatgatgtccatgtttccggccacgcctgccaggaggagcagaag
ctgatgctcaccctgaccagacccaagtatttcctgcccgtgcacggcgagtacaagcag
ctgaaaaagcatgccctgaccgccgcgtctctgggcattcccaccagcaacatcctcatt
gccgagaacggctccaacgttatcctgagccgggacgagatcaagctgggcgagcctgtc
accgccggtgctgtgatggtggacggcctgggcgtgggcgatgtgggcaatgtggtcctg
cgtgaccgcaagcatctctctgaggacggtctggtcatcattgtggctaccgtggacagc
aagaccggcaaggtgctggccgggcctgaccttgtgagccgcggctttgtctatgtgcgc
gagaacgagagcctgatggacggggcccagagcattgtggaaaacgcgctggatcgctgc
gtggaagagcatgtgcgcgactggaacagcgtcaagacccgggtgcgtgaggcgctgagc
agctatatttaccgccgcaccaagcgcagcccgatgatcctccccattctgatggaggta
taa
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