Faecalibacterium duncaniae JCM 31915: GXM22_13170
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Entry
GXM22_13170 CDS
T08154
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
fdu
Faecalibacterium duncaniae JCM 31915
Pathway
fdu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fdu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GXM22_13170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fdu03019
]
GXM22_13170
03400 DNA repair and recombination proteins [BR:
fdu03400
]
GXM22_13170
Enzymes [BR:
fdu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GXM22_13170
Messenger RNA biogenesis [BR:
fdu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GXM22_13170
DNA repair and recombination proteins [BR:
fdu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
GXM22_13170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
HRDC
RecQ_Zn_bind
HHH
ResIII
HHH_5
DUF763
AAA_16
Motif
Other DBs
NCBI-ProteinID:
QIA43927
LinkDB
All DBs
Position
complement(2749575..2751155)
Genome browser
AA seq
526 aa
AA seq
DB search
MESPHSILKKVFGYDSFRPGQEEIVSRLLAGQDVLAVMPTGAGKSICYQVPALLLPGITI
VVSPLVSLMKDQVGALVQAGVAAAFLNNSLTDNQKALMLRRAREGWYKIIYVAPERLEMP
GFQRFAQEREISMVTVDEAHCISQWGQDFRPSYLRIKAFVDSLPKRPVVGAFTATATAHV
REDIRTHLELHTPYEVTTSFDRPNLYFATRRALPSEKPKVLLELVLRERDNAGIIYCSTT
RQVDETTRLLQSRGIRAAAYHAKLDADTRRQNQDDFLYDRVQIMVATNAFGMGIDKPNVR
FVIHYNMPKDLESYYQEAGRAGRDGEPARCTLLYSGTDVRTIRFFIDKEMEADNGLPADV
KAEAARKAEERLKYMTFYSTTPRCLRGYLLSYFGEAAPQKCENCSNCLLAAQAAEQVEEQ
AAQARQRAAASAKRLASASRRRADEDALSEADEKLLAALYALRKRLAAKQKLPAYMVFND
STLRQMALKKPLSVEELLNIPGVGEKKAARYGQEFLSVIEETVGTR
NT seq
1581 nt
NT seq
+upstream
nt +downstream
nt
atggaaagtccgcatagtattctgaaaaaagtctttggctacgacagcttccgcccgggt
caggaggagatcgtctcccgcctgctggccgggcaggatgtgctggccgtgatgcccaca
ggtgcgggcaagtccatctgctatcaggtgccggccctgctgctgccgggcatcaccatc
gtggtctcgccgctggtgagcctgatgaaggatcaggtgggggcgctggtacaggccggt
gtggcggcagctttcctgaacaacagcctgacggacaaccagaaggccctgatgctccgc
cgcgcccgggaggggtggtataagatcatctatgtggctccggagcggctggagatgccg
ggtttccaacggtttgcgcaggagcgggagatcagcatggtcacggtggacgaggcccac
tgcatcagccagtgggggcaggacttccgccccagctacctgcgcatcaaggcgtttgtg
gacagcctgcccaagcgcccggtggtgggagcctttacggccaccgccacggcccatgtg
cgggaggacatccgcacccatctggaactccacaccccctacgaggtgaccaccagcttc
gaccggcccaacctctattttgccacccgcagggccctgcccagcgagaagcccaaagtt
ctgctcgaacttgtactcagggagcgggacaatgcgggcatcatctattgcagtaccacc
cggcaggtggacgagaccacccgcctgctgcagagccggggcatccgtgcggcagcctac
cacgccaaactggatgcggatacccggcggcagaatcaggacgatttcctctatgaccgg
gtgcagatcatggtggcgaccaatgccttcggcatgggcatcgataagccaaacgtccgg
ttcgtcatccattataatatgcccaaggatctggagagctattatcaggaggcgggccgc
gcgggccgtgacggggagccagcccgctgcaccctgctctattccggcaccgatgtgcgc
accatccggttcttcatcgacaaggagatggaggctgacaacggcctgcctgcggatgtc
aaggccgaagcggcacgcaaggcagaggaacggctcaagtacatgaccttctactccacc
acgccgcgctgcctgcgggggtatctgctgagctacttcggcgaggccgcgccccagaag
tgcgagaactgttccaactgtctgctggcagcacaggccgccgaacaggtggaggagcag
gcggcacaagcccgccagcgtgccgcggccagtgcgaagcggctggcctcggcctcccgc
cgccgtgccgacgaggatgccctcagcgaagcggacgagaagctgctggcggccctctat
gccctgcgcaagcggctggccgcaaagcagaagctccctgcctatatggtgttcaacgat
tccaccctccgccagatggcactgaaaaagcccctgagcgtggaggaactgctcaatatc
cccggtgtgggcgagaaaaaggccgcccgctatgggcaggagttcctcagtgtgatcgaa
gaaaccgttggcacacggtga
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