Faecalibacterium duncaniae JCM 31915: GXM22_14100
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Entry
GXM22_14100 CDS
T08154
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
fdu
Faecalibacterium duncaniae JCM 31915
Pathway
fdu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fdu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GXM22_14100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fdu03019
]
GXM22_14100
Enzymes [BR:
fdu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GXM22_14100
Messenger RNA biogenesis [BR:
fdu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GXM22_14100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25_NTPase-like
Motif
Other DBs
NCBI-ProteinID:
QIA44096
LinkDB
All DBs
Position
complement(2918427..2920352)
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AA seq
641 aa
AA seq
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MTFNELNLSAPVLRAVAQAGYESPSPIQAAAIPPVLAGRDLMGCAQTGTGKTAAFALPML
DRLTASAPRKKGAIRALILTPTRELALQIGESFEAYGKYLTLRSTVIFGGVGQAPQVAAL
KKGVDILIACPGRLNDLVGQGLLDLSNIEIFVLDEADRMLDMGFVHDVKKVIAKLPRQRQ
NLMFSATMPKEIEQLAAGILHDPAFVKVDPVSSTVDRIQQSLYFVEKGNKKFLLPWLIKN
LKPEVVNALVFSRTKHGADKIAKDLNKQGIPAAAIHGNKSQTARVTALEDFKAGKTRVLV
ATDIAARGIDISELSHVFNYDLPEVPETYVHRIGRTARAGADGTAVSFCAPEEKEYLAGI
EKLNRRQIPVVSGHPWDGVPAPVKAAPPVRGKKPKAEAEQPEKPVKAEKPAKAEKAAKAE
KPAVPKKEKAAAKQPSPKNTEPKEGTSMEENQKRTSGGRSENRRSNNSRTRREGNAPQPA
NRGSNAQPKFDPHFVSAPEATPLRPVKKAPAAQPAAKQTAPAQNGQRQRGGQPARAEQRT
DRNDPRTEQRAERNARNARPAQNSQSQQGSRNAAQSSRPARPAKSEAPRGRSRNAAPARD
EDPGLMLISRRPPQQKFTNFEEYMTAHGGATAPIEDHTDET
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atgacatttaacgaactgaatctttccgcgcctgtgctgcgtgctgtggcacaggcgggc
tatgaatccccctcgcccattcaggcagcggccattccgccggtgctggccgggagggac
ttgatgggctgcgcccagacgggtaccggcaagacggctgcctttgcgctgcccatgctc
gaccgcctgactgccagcgcgccccgcaaaaagggtgccatccgcgccctgatcctgact
cctacccgggagctggctttgcagatcggcgagagctttgaagcctacggcaagtatctg
accctgcgcagcaccgtcatctttggcggtgtgggtcaggctccgcaggtcgcagccctg
aaaaagggcgtggacatcctcattgcctgcccgggccgcttgaacgacctggtggggcag
gggctgctggacctctccaacattgagatctttgttctggacgaagccgaccggatgctg
gatatgggctttgtccacgacgtgaaaaaggtgatcgccaagctgcccaggcagcgccag
aacctgatgttcagcgccaccatgcccaaggagatcgagcagctggccgcaggcatcctg
catgatccggcctttgtcaaggtggacccggtgtccagcacggtggaccgcatccagcag
agcctgtattttgtggagaagggcaacaagaagttcctgctgccctggctcatcaaaaac
ctgaagcctgaggtggtgaacgcgctggtgttcagccgcaccaagcacggggccgataag
atcgcaaaagacctgaacaagcagggcatccccgctgccgccatccacggcaacaagagc
cagaccgcccgtgtgacggcgctggaggatttcaaggcgggcaagacccgggtgctggtg
gcgaccgatatcgccgcccgcggcattgacatcagcgagctgtcccatgtgttcaactac
gacctgcccgaggtgcccgagacctacgtccaccgcattggccgcacggcccgtgccggt
gccgacggcactgccgtcagcttctgcgccccggaggaaaaggaatatctggccgggatc
gaaaagctgaaccgccgccagatcccggttgtctccggccacccctgggacggcgtgcct
gcccctgtcaaggctgcgcccccggtgcggggcaaaaagcccaaggcggaagcagagcag
ccggaaaagcctgtgaaggcagagaagcctgccaaagcagaaaaggcagccaaggccgaa
aagcccgctgtccccaagaaggaaaaagcggctgcaaaacagcccagccccaagaatacc
gaaccgaaagaaggaacatccatggaggaaaaccagaagcgcacttccggcggacgcagt
gagaaccgccgctccaataacagccgcactcgccgcgagggcaatgccccgcagccggcc
aaccgcggcagcaacgcccagcccaaattcgacccccactttgtgagcgccccggaggct
accccactgcgcccggtcaaaaaggctccggctgcgcagcctgccgcaaagcagactgct
ccggcccagaacggccagcgtcagcgcggcggtcagcctgcccgtgccgagcagcgcacc
gaccgcaatgatccgcgcaccgagcagcgggcagagcggaatgcgcgcaatgcccgcccg
gcccagaacagccagagccagcagggcagccgcaatgcggcgcagagcagccgtccggcc
cgccccgccaagagcgaggcaccccgcggccgcagccggaacgccgcccccgcacgggac
gaggacccgggcctaatgctgatcagccgccgcccgccccagcagaagttcaccaacttt
gaagagtatatgaccgcccacggcggtgccaccgcacccattgaggatcacaccgatgaa
acctga
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