Flavobacterium davisii: JJC05_02240
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Entry
JJC05_02240 CDS
T10287
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
fdv Flavobacterium davisii
Pathway
fdv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fdv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JJC05_02240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fdv03019
]
JJC05_02240
Enzymes [BR:
fdv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JJC05_02240
Messenger RNA biogenesis [BR:
fdv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JJC05_02240
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
ERCC3_RAD25_C
Cas3-like_C_2
Flavi_DEAD
DUF5492
P-loop_SecA
CMS1
Motif
Other DBs
NCBI-ProteinID:
QYS89240
LinkDB
All DBs
Position
complement(444015..445298)
Genome browser
AA seq
427 aa
AA seq
DB search
MTFEQFSFHRNIVESIKEATYTNPTEIQEKAIPIILEGEDLVGCAQTGTGKTAAFAIPIL
NYLIPIVGSIKKRKYIRTVVLAPTRELALQIEESFNKYGKYTNCTTLTIYGGVPQTTQVE
KLKEGIDILIATPGRFLDLNKQGVIDINHLHHLVIDEADLMLDMGFINDVRKITKIAPQN
RQTLLFSATMPIEIREIAEEFLKKPKYVEVKSTINNSQNIVQSIYFVEKTDKKQLLVRVI
KQEKLVNTIIFVRTKQGAENLVEFLQKNQLNCDALHGDKSQNARQKVLENFKNKTIDFLI
ATDVASRGIDIDQLPVVINYDLPNIPETYIHRIGRTGRAGHSGIAISFCGKDEEIYWKDI
IRLLKNKVTTVDNHPFPWKSSNNNGKKRNPSSNNQIATSVSSNSSKQRSGKKSRKSDNSK
KNKKRWY
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgacttttgaacagtttagttttcatcgaaatattgtagagtcaataaaggaagcgacc
tatacaaatcctactgaaatacaagaaaaagcaatcccaattattttagaaggagaagat
ttagttggttgtgcacaaacaggaacaggaaaaacggctgcttttgctatacctatttta
aattatttaattcctatagtaggatctattaaaaaacgaaaatatattcgcaccgttgtt
ttagctcctactcgtgaattagcgttacaaatagaagaaagctttaataaatacggaaaa
tatacgaattgcacgacacttactatttatggtggtgtaccccaaactactcaagtagaa
aaattaaaagaaggaattgatatattaattgccacgccgggacgatttttagatttaaat
aaacaaggagtaattgatatcaatcatctacatcatttagtgatagacgaagctgattta
atgcttgatatgggatttattaatgatgtaaggaaaataacaaaaatagcgcctcaaaac
agacaaacacttttgttttctgccacaatgcctatagaaattagagaaatagcagaagaa
tttcttaaaaaacccaagtatgtagaagttaaatcaactattaataacagtcaaaacata
gtacaatcaatttattttgttgaaaaaacagataaaaaacaacttttagtacgagttatc
aagcaagaaaagctagttaatacaataatatttgtaagaactaagcaaggggctgaaaat
cttgttgaatttttacaaaagaatcaattaaattgtgatgcccttcatggagataaatca
caaaatgcacgccaaaaagtattagaaaattttaaaaataaaacaattgattttttaata
gcaacagatgttgcttcaagaggaattgacatagatcaactacctgtagtcattaattat
gatttgcctaatattccagaaacatatattcacagaataggtagaacgggtagagcagga
cattctggtattgctatttcattttgtggtaaagatgaagaaatatattggaaagatatt
attagattgttaaaaaataaagtaacaacggtagataatcatccttttccttggaaatct
tccaataataatggtaagaaacgaaacccttcttctaataatcagatagctactagtgta
agtagcaactcgtcaaaacaaagaagcggaaaaaaatcgagaaagtcagataattctaag
aaaaataaaaaacgttggtattaa
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