Flavobacterium davisii: JJC05_02375
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Entry
JJC05_02375 CDS
T10287
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
fdv Flavobacterium davisii
Pathway
fdv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fdv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JJC05_02375
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fdv03019
]
JJC05_02375
03009 Ribosome biogenesis [BR:
fdv03009
]
JJC05_02375
Enzymes [BR:
fdv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JJC05_02375
Messenger RNA biogenesis [BR:
fdv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JJC05_02375
Ribosome biogenesis [BR:
fdv03009
]
Prokaryotic type
rRNA helicases
JJC05_02375
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
RRM_5
TssR_C
Cas3-like_C_2
RecG_N
Motif
Other DBs
NCBI-ProteinID:
QYS89255
LinkDB
All DBs
Position
476325..478148
Genome browser
AA seq
607 aa
AA seq
DB search
MNKFEQLGLNESLVLAIKDLGFENPSEVQEKAIPLLLEQDTDIVALAQTGTGKTAAFGFP
LIQKINAEDRTTQALILSPTRELCLQITNEIKLYSKYIKNLNTVAVYGGASINEQAREVK
RGAQVIVATPGRMQDMINRGMVNIKNISICVLDEADEMLNMGFYDDICSILSDTPDDKNT
WLFSATMPAEVARIAKQFMHTPQEITVGHKNQGSTNVSHEFYLVNARDRYAALKRLADTN
PDIFSVIFCRTKRDTQAIAEKLIEDGYNAAALHGDLSQAQRDAVMKAFRGRQIQMLVATD
VAARGIDVDDVTHVINYQLPDEIETYTHRSGRTGRAGKSGTSMVIITKSELRKIHQIERI
IKTKFEERPIPSGIEICEIQLYHLANKIKDVEVDHEIDNYLPAIYDVLQDLTKEELIKKM
VSVEFNRFLSYYKKSRDLHQESSGNKTTTIPTEGAVRYFINIGARDGFEWMELKDFLKEK
LELGRDDVFKVDVKEGFSFFNTDAEHVELVMNNLNGITLEGRRINVEISKNDGSSNNKRR
DHGGRGGKREGGERGERRGEGAPRGDRRDGGKRSSDRRNSSDDRAPKNERRSRRSDSSSS
DRRGRRS
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atgaataaatttgaacaattaggtcttaatgaatcgctagtgctggcgattaaagatcta
ggatttgaaaatccctctgaagtacaagaaaaagcgattcctctattattagagcaagat
accgacattgttgcactggcgcaaactggtactggaaaaacagccgcatttggctttcct
cttattcaaaaaatcaacgcagaagaccgaacaactcaagcgttaatattatctcctact
cgtgaattatgtttgcaaattacgaatgaaatcaaactttattctaagtacatcaagaat
ttaaataccgtagcggtatatggtggtgcaagcattaatgaacaggctagagaagtaaaa
agaggtgctcaagttattgtagctactccgggacgtatgcaggatatgattaaccgtgga
atggttaatattaaaaacatctcaatctgtgtattagatgaagcagatgaaatgcttaat
atgggattctacgatgatatctgctctattttatctgatactcctgatgacaaaaatact
tggttgttttcggctacaatgcctgctgaagtagcaagaattgcaaaacaattcatgcac
actccacaagaaattacagtaggtcacaaaaaccaaggttctacaaacgtttcacatgag
ttttatttagttaatgcacgcgatcgttatgctgctttaaagcgtttggctgatactaat
cctgatattttttctgttattttttgtagaacaaaaagggatacacaggcaattgcagaa
aaattaattgaagatggttataatgctgctgccttacatggtgatttatcacaagctcaa
cgtgatgctgttatgaaagcatttcgtggtcgtcagattcaaatgttagtagctactgac
gttgcagcacgtggtatagacgtagatgatgtaacacatgttattaattatcaattacct
gatgaaattgaaacctatactcaccgttcaggtcgtactggtcgtgctggaaaatcaggt
acttcaatggttattatcacaaaaagtgaactacgaaaaattcatcaaattgagcgaatc
atcaaaactaaatttgaagaaagacctattcctagtggaattgaaatttgtgaaattcaa
ctatatcacttagctaacaaaataaaagacgtagaagtagatcatgaaattgacaattac
ttacctgctatttatgatgttcttcaagatttaaccaaagaagaattaattaaaaaaatg
gtatcggttgaattcaatcgtttcttatcttactataaaaaatcgcgtgatttacatcaa
gaatcttctggtaataaaacaacaactattcctacagaaggcgctgttcgttacttcatt
aacattggagctcgtgatggttttgaatggatggaattaaaagatttcttaaaagaaaaa
ctagaattaggtcgtgatgacgtatttaaagtagatgtaaaagaaggcttttctttcttt
aataccgatgctgaacacgtagaattagttatgaataatttaaacggtattactttagaa
ggacgtcgtataaatgtagaaatatctaaaaacgatggatcttctaacaataaacgtcgt
gatcatggtggtagaggcggaaaacgagaaggaggagaacgcggagaaagacgtggagaa
ggcgctcctagaggtgatagacgcgatggaggtaaaagatcatccgatagaagaaattct
tctgatgacagagcccctaaaaacgaaagacgatctcgtcgttcagattcttcttcatcg
gatcgtagaggccgtagaagttaa
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