Flavobacterium davisii: JJC05_03465
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Entry
JJC05_03465 CDS
T10287
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
fdv Flavobacterium davisii
Pathway
fdv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fdv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JJC05_03465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fdv03019
]
JJC05_03465
Enzymes [BR:
fdv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JJC05_03465
Messenger RNA biogenesis [BR:
fdv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JJC05_03465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
QYS89391
UniProt:
A0A8G0KSP7
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All DBs
Position
698527..700005
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AA seq
492 aa
AA seq
DB search
MSSFEQFNLPKSLQKALDELKFVSPTPIQQKSFNVIISGRDVMGIAQTGTGKTFAYLLPL
LKQYKFAQTYNPRMMILVPTRELVVQVVDEIEKLTAYMSVRTLGIYGGVNINTQKNQVYQ
GIDILVGTPWRIMDLALDNVLSLQEVNKLVIDEFDEMLNLGFRPQITSILTMLKPKRQNV
LFSATMTDEVDEILNDYFDFPEEITLAKSGTPLEKIQQLSYHVPNFNTKVNLLKHLLQTD
DSLERVLIFVNNKKIADMLHEKIEAAYPDQFGIIHSNKSQNYRLLTMSSFQRGETKGIIT
TDVMARGLDISNITHVINFEMPEIPEQYIHRIGRTGRADTEGIAISFIAPREEDIKIEAE
MLMDLEIPILDLPENIEISTQLIGPEKEKQKIKHLLKKPKTSENSAFQDKSEKNKKVNLG
GPEKENLAKQLLEIALLNVNVQKNARKNKFSDSIPLIISKSPLLITLIRLFRKKYINKSR
FESSLLLEVNPF
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcatttgagcaatttaatttaccaaaatctttacaaaaagcattagacgaatta
aaatttgtcagtcctacccctattcagcaaaaatcatttaatgtaatcatatctggtaga
gatgtaatgggaattgctcaaacaggaacaggtaagacttttgcatacttacttccttta
ttaaaacaatacaagtttgctcaaacatacaatcctcgcatgatgattttggttcctact
agagaactagttgtacaagtagtagatgaaatagaaaaacttacagcatacatgtctgtt
agaactttaggaatctatggaggtgtaaacattaatacgcaaaaaaatcaagtatatcaa
ggaatagatattttagtaggaacgccgtggcgcataatggatttagctttagataacgtc
ttatccttacaagaagtaaataaactagtgatcgacgaatttgatgaaatgttaaattta
ggttttcgccctcaaattacttccattttaactatgttaaaacccaaacgtcaaaatgta
cttttctctgctacaatgacagatgaagtagacgaaatcctaaacgattattttgacttt
ccagaagaaattacacttgctaaatcaggcactccattagaaaaaatacaacaattatcg
tatcatgttcctaactttaatactaaagtaaatttattaaaacacttactacaaacagat
gattctttagaaagagttctaatattcgttaataataaaaaaattgccgatatgcttcat
gaaaaaatagaagcagcatatccagatcaatttggcataatacattctaataaatctcaa
aactatcgtttacttacaatgtccagctttcaaaggggcgaaacaaagggtattattaca
actgatgtaatggcaagaggtttagatatttcaaacattacacatgttataaattttgaa
atgcctgaaattccagaacaatatattcatcgtattggtagaactggacgtgccgataca
gaaggaattgctattagttttattgcaccaagagaagaagacataaagatagaagctgaa
atgttaatggatcttgaaatccctatcttagatttacctgaaaacattgaaatttcaaca
caattaattggccctgaaaaagaaaagcaaaaaataaaacacttgcttaaaaaacctaaa
acatctgaaaacagcgcctttcaagacaaatcggaaaaaaataaaaaagtaaatttaggt
ggtccagaaaaagaaaacctcgcaaaacagctcctagaaatcgcgctgttgaacgtaaac
gtgcagaaaaacgcaagaaaaaataagttttctgacagtattccactcattattagcaaa
tcacctctattgataactctaataaggttattcagaaaaaaatatatcaataaatcaagg
ttcgaaagttccttactccttgaagtaaacccattttaa
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