Flavobacterium davisii: JJC05_11015
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Entry
JJC05_11015 CDS
T10287
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
fdv Flavobacterium davisii
Brite
KEGG Orthology (KO) [BR:
fdv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
fdv03016
]
JJC05_11015
Enzymes [BR:
fdv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
JJC05_11015
Transfer RNA biogenesis [BR:
fdv03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
JJC05_11015
Prokaryotic type
tRNA splicing ligases
JJC05_11015
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF6902
Motif
Other DBs
NCBI-ProteinID:
QYS88280
UniProt:
A0A8G0KW18
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All DBs
Position
2308386..2309810
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AA seq
474 aa
AA seq
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MENRQINGNDLIAMGYQSGPVLGLALKINKKRLGFTREQMMEHYKKVLGNPEDFLDDNNF
SKLASALIEQTNTKPEDFINLIQDPNSFVLFGENHIEEGAKKQMEIAMKLPVTVAGALMP
DAHQGYGLPIGGVLATKNAIIPYGVGVDIGCRMALSVYDISEFYYYENEARFKKELISNS
KFGAGHGYHGQYKSDHFVLQNKAFNENLFLSNLKDKAWSQLGTSGGGNHFVEFGIMEFEK
EDIFLNIPKGKYVALLTHSGSRGFGATIAGHYTKLAKQVCKLPHEAQNLAYLDLNSDLGQ
EYWIAMNLAGDYASACHEIIHNKIQKALGATILAKVENHHNFAWKESYKGEEVIVHRKGA
TPAGKGVMGIIPRSMTAPGFLVRGKGEEVAINSASHGAGRQMSRTQAIKNITKNDMVSIL
QDHGVTLIGAGLDEAPMAYKDINLVMESQKELVDVVAKFTPKMVRMADDGSRED
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atggaaaatagacagataaatggaaatgatttaattgcgatgggataccaatcgggacct
gttttaggtttagctttgaaaataaataaaaaacgtttgggatttactcgtgaacagatg
atggagcattataaaaaagttttaggaaaccctgaagactttttagacgataacaatttc
agcaagttggcatcggcattaatagagcagactaatacgaaacccgaagatttcattaac
cttattcaggatccaaattcatttgtactttttggtgaaaatcatatagaagaaggagcg
aaaaaacagatggaaattgcgatgaaacttcctgttacagttgcgggtgcattaatgcca
gacgctcatcaaggatatggcttgcctattggtggtgttttggcaacaaaaaatgccata
atcccttatggagttggtgtggatataggttgtagaatggcgttatctgtttatgatatt
tcggagttctattattatgaaaatgaggcaagatttaagaaagaattgatttccaattca
aaatttggagctggacacggttatcacggtcagtataaaagtgatcatttcgttttacag
aacaaagcttttaatgaaaatctatttctaagcaaccttaaagataaagcatggtcacaa
ttaggaacttctggaggcggaaaccattttgttgagtttgggataatggagtttgaaaaa
gaggacatctttttaaatatcccaaaagggaaatatgttgccttattaacgcactcaggt
tctagaggttttggtgcaacaatagccgggcattacactaaattagcaaaacaagtatgt
aagttgcctcatgaagctcaaaatttagcatacttagatttaaactcggatttaggtcaa
gaatattggatagcaatgaatttagctggcgattacgcttcggcttgtcatgaaattatt
cataacaaaattcaaaaagctttgggagcaactatattagcaaaagttgaaaatcatcat
aattttgcttggaaagaatcgtataagggagaagaggttattgtacaccgaaaaggagca
accccagcaggaaaaggtgtgatggggattataccgagaagtatgaccgcaccgggtttt
ttagtgagaggaaaaggagaagaagtagctataaattcagcttcacacggcgctggtcgt
caaatgagcagaacacaagcaataaagaatattactaagaatgatatggtatccatttta
caagatcacggagtgacgcttattggcgcaggtttggatgaagctccaatggcttataag
gatatcaatttagttatggaatcacaaaaagaattagttgatgtcgttgcaaaatttact
ccaaaaatggttcgaatggcggatgatgggagtagagaggattga
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