Frateuria edaphi: LQ772_00720
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Entry
LQ772_00720 CDS
T08888
Name
(GenBank) DEAD/DEAH box helicase
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
fed
Frateuria edaphi
Pathway
fed03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fed00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LQ772_00720
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fed03019
]
LQ772_00720
Enzymes [BR:
fed01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LQ772_00720
Messenger RNA biogenesis [BR:
fed03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LQ772_00720
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RhlB
Motif
Other DBs
NCBI-ProteinID:
UGB45856
LinkDB
All DBs
Position
146837..148546
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AA seq
569 aa
AA seq
DB search
MSETVLTDTFFANFDLHPLLQQGLAEAGFTRCTPIQALTLPLALTGRDVAGQAQTGTGKT
CAFLVALMNRLLTRPAVAERKDSDPRALIIAPTRELAIQIDKDARSIGRHTGLKTALIYG
GVDYDKQRQQLKDGCDIIIATPGRLLDYYKQQVFGFNGVEVMVIDEADRMFDLGFIKDVR
FIFRRLPAREQRQVLLYSATLSHRVLELAYEHMHEAEKLVVETDNVTADKVRQVVYFPAK
EEKMPLLLNLLEREKPSRSIVFVNTKAAAERITERVKRQGYRVGALSGDVPQLKRQKLLQ
RFQEGQLDMLVCTDVAARGLHIPAVSHVFNYDLPQDAEDYVHRIGRTARLGAEGDAVSFA
CDLYAMSLPDIETYIGQKIPVATVEPDMLVMPRPREIDPQFAAEAAADSAQFGDKVEPRG
DERKSSGGRSRQGGRGGERGSRDGRPPRAPRPPRAEGEVALATEPQPGVVAADPVAPDVA
PAVDGEGARKRRRRRGGRGRRREGGENAATQPQAAAENRAPHGERKPPRERGAGPSRPSR
QVTVQSGVGDAASKKPSFFRRLTRLFTGR
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaaaccgtactgaccgacacctttttcgccaatttcgaccttcacccgctgctg
cagcagggcctcgccgaggccggtttcacacgctgcacgccgatccaggcgctgaccctg
ccgctcgcgctgaccggccgcgacgtcgccggccaggcccagaccggcaccggcaagacc
tgcgccttcctggtcgcgctgatgaaccgcctgctgacccgtccggccgtggctgagcgc
aaggattccgatccgcgcgcgctgatcatcgcgccgacccgcgagctcgcgatccagatc
gacaaggacgcgcgcagcatcggccgccacacgggcctcaagaccgcgctgatctacggc
ggcgtcgactacgacaagcagcgccagcagctcaaggacggctgcgacatcatcatcgcc
acgcccggccgcctgctcgactactacaagcagcaggtgttcggcttcaacggcgtcgag
gtgatggtgatcgacgaggccgatcgcatgttcgacctcggcttcatcaaggacgtgcgc
ttcatcttccgccgcctgccggcgcgcgagcagcgccaggtgctcctgtactcggccacc
ctgagccaccgcgtgcttgaactggcctacgagcacatgcacgaggcggagaagctcgtg
gtggagaccgacaacgtcaccgccgacaaggtgcgccaggtcgtctacttcccggccaag
gaagagaagatgccgctgctgctcaacctgctggagcgcgagaagcccagccgcagcatc
gtcttcgtcaacaccaaggccgccgccgaacgcatcaccgagcgggtcaagcgccagggc
taccgcgtcggcgcgctgtccggggacgtgccgcagctcaagcgccagaaactgctgcaa
cgcttccaggaaggccagctcgacatgctggtgtgcaccgacgtcgctgcgcgcggcctg
cacatcccggcggtcagccacgttttcaactacgacctgccccaggacgccgaggactac
gtgcaccgcatcggccgcaccgcgcgcctgggtgccgagggcgacgcggtcagcttcgcc
tgcgacctgtacgcgatgagcctgccggatatcgagacctacatcgggcagaagattccg
gtggcgacggtcgagccggacatgctggtgatgcccaggccgcgtgagatcgacccgcaa
ttcgccgccgaagcagccgccgacagcgcgcaattcggcgacaaggtcgagccgcgcggc
gatgaacgcaagtcgtccggcggtcgctcgcgccagggtggtcgcggtggcgagcgtggt
tcgcgcgacggccgtccgccgcgcgcgccgcgtccgccgcgcgccgaaggtgaggtcgcc
ctcgcgaccgagccgcaaccgggcgtggtggcagcggatccggtggcaccggacgtcgcg
cccgccgtggatggggagggcgcgcgcaagcgtcggcgtcgccgcggtggacgcggccgc
cgccgcgagggcggcgagaatgctgcgacccagccgcaggctgcggcggagaatcgcgcg
ccgcacggcgagcgcaaaccgccgcgcgagcgtggcgcgggcccgtcacggccgtcgcgc
caggtgacggtgcagtcgggcgtgggcgatgcggcctccaagaagccgagcttcttccgc
cgcctgacgcgcctattcaccgggcgctga
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