Frateuria edaphi: LQ772_02470
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Entry
LQ772_02470 CDS
T08888
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
fed
Frateuria edaphi
Pathway
fed03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fed00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LQ772_02470 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fed03019
]
LQ772_02470 (recQ)
03400 DNA repair and recombination proteins [BR:
fed03400
]
LQ772_02470 (recQ)
Enzymes [BR:
fed01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LQ772_02470 (recQ)
Messenger RNA biogenesis [BR:
fed03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LQ772_02470 (recQ)
DNA repair and recombination proteins [BR:
fed03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LQ772_02470 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
HHH
ResIII
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
UGB46184
LinkDB
All DBs
Position
560124..561938
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AA seq
604 aa
AA seq
DB search
MSSRALDLLHSVFGYASFRGQQQAIVHAVAEGGDALVLMPTGGGKSLCYQIPALLRPGTA
IVVSPLIALMQDQVDALREAGVAAAYLNSSLPPEDQREVERRLLAGGLKLLYVAPERLLT
SRFLGLLEQIDVALFAIDEAHCVSQWGHDFRPEYRELAVLADRFAQIPRIALTATADERT
REEIVERLGLGQAHRFVSSFDRPNIRYRVALKHNPRTQLMQFLDGHRGEAGIVYALSRKK
VDETAAWLAEAGIEALPYHAGLEARVRAANQQRFLREDGVVMVATVAFGMGIDKPDVRFV
AHLDLPRSMEGYYQETGRGGRDGLPAEALMLYGLSDVVTMSQMIAQSDSADERKRIERQK
LEGLLAFAEATRCRRELLLGAFGEDYEGPCGNCDNCIEAPKTWDATVPAQKALSAVYRSG
QRFGAGHVIDILRGIEGERMRQLGHDSLTTFGIGADMDEKGWRSVFRQLLAAGLLEADAE
GYGTLRLTTASRAVLTGGQPVLLREDARPVRSTRRRRDSQLVTGASLGIEAYEQPLWDAL
RGLRTRLAKQQGVPPYVVFHDATLLAMLRAMPANEDELAEVSGVGEAKLKRYGRDFLAVI
NAPE
NT seq
1815 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcccgcgccctcgatcttctccacagcgtcttcggttacgccagcttccgcggc
cagcaacaggccatcgtgcacgcggtggccgagggcggcgacgcgctggtactcatgccc
accggtggcggcaagtcgctgtgttaccagattcccgcactgctgcgaccgggcacggcg
atcgtcgtctcgccgctgatcgcgctgatgcaggaccaggtcgacgccttgcgcgaggcg
ggcgtggccgcggcctacctcaattccagcctgccgcccgaggatcagcgcgaggtcgaa
cggcgcttgctcgccggcggcctgaaactgctttacgtagcgcccgagcggctgctcacg
tcgcgcttccttggcctgctcgaacagatcgacgtggcgttgttcgccatcgacgaggcg
cactgcgtctcgcagtggggccacgacttccgtccggagtaccgcgaattggcggtgctg
gccgatcgctttgcgcagatcccgcgcatcgcgctcaccgccaccgccgacgagcgcacc
cgggaagaaatcgtcgaacggctcgggcttggccaagcgcaccggttcgtctccagcttc
gaccggccgaacatccgctaccgcgtggcgctcaagcacaatccgcgcacgcagctgatg
cagttcctcgatggccaccgtggcgaggccggcatcgtctatgcgctgagccgcaagaag
gtcgacgaaaccgcagcatggctggccgaggccggcatcgaggcattgccgtaccacgcg
ggcctggaagcgcgggtgcgcgcggccaaccagcagcgcttcctgcgcgaggatggcgtg
gtgatggtcgccacggttgccttcggcatgggcatcgacaagccggacgtgcgcttcgtc
gcgcacctggacctgccgcgctcgatggagggctactaccaggagaccggccgcggcggt
cgcgacggcctgccggcggaagccctgatgctctatggcctgtccgacgtggtgacgatg
agccagatgatcgcccagtccgactcggccgacgaacgcaagcgcatcgaacggcagaag
ctcgagggcctgctcgccttcgccgaggccacccgctgccggcgcgagctactgcttggc
gccttcggcgaggactacgagggaccctgcggcaactgcgacaactgcatcgaggcgccg
aagacctgggatgccactgtccctgcgcagaaggcgctatcggcggtctatcgcagcggg
cagcgtttcggcgccgggcatgtgatcgacatcctgcgcggcatcgagggcgaacgcatg
cgccagctcggccatgacagcctgaccacgttcggcatcggtgccgacatggacgagaaa
ggttggcgctcggtgttccgtcagctgctcgccgccgggctgctggaagccgacgccgag
ggctacggcaccctgcgcctcacgaccgccagccgggccgtgctgaccggcggccaaccg
gtgctgctgcgggaggacgcacgccccgtgcgcagcacccgccgccgccgcgacagccag
ctggtgaccggcgcaagcctgggcatcgaagcctacgaacaacccctctgggatgccctg
cgcggcctgcgcacccggctggccaaacagcagggcgtgccgccctacgtggtgttccac
gacgccacgctgctggcgatgttgcgcgccatgcccgccaacgaggatgagctggcggag
gtcagtggcgtgggcgaggcaaagctcaagcgatacggccgcgatttcctggcggtgatc
aacgcgccggagtag
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