Frateuria edaphi: LQ772_02905
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Entry
LQ772_02905 CDS
T08888
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
fed
Frateuria edaphi
Brite
KEGG Orthology (KO) [BR:
fed00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fed03019
]
LQ772_02905 (hrpA)
Enzymes [BR:
fed01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
LQ772_02905 (hrpA)
Messenger RNA biogenesis [BR:
fed03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
LQ772_02905 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
Helicase_C
OB_NTP_bind
DEAD
HA2_C
AAA_22
AAA_19
nSTAND3
HA2_N
SRP54
AAA_25
AAA_30
NACHT
PhoH
T2SSE
AAA_23
ABC_tran
Flavi_DEAD
TsaE
Motif
Other DBs
NCBI-ProteinID:
UGB46265
LinkDB
All DBs
Position
654689..658810
Genome browser
AA seq
1373 aa
AA seq
DB search
MNDTPPASSDEARLRALREALSGVSSRDFGRLLGRWRGLSRQPDARKLDALAADIGVSAA
RRQARAAAKPAIRLDESLPITTRADEIVELIRKHQVVVIAGETGSGKTTQLPKLCLAAGR
GEAGMIGCTQPRRLAARSVARRVAEELGTALGEQVGFQVRFTDQVSERTLVKFMTDGILL
AETQGDPWLSSYDTVIIDEAHERSLNIDFLLGYLKRLAQKRPELKIIVTSATIDTARFAQ
HFNDAPVVSVEGRAYPVEVRWRAADALGAHPVRDRGPHPRDTSDRVQQGSAEHIGLVLDE
IMADRSLGSGPGDVLVFLPGEREIRDAHLLLSRRQYRETEVLPLYARLSAADQDRVFKPG
PKRRIVLATNVAETSLTVPRIRYVVDTGSARVMRYSQRSQLERLHVEPVSQAAADQRKGR
CGRIGPGICYRLYGESDFETRPRYTDPELLRSSLANVILRMLSLKLGEVEDFPFLEAPDP
RMVADGYRRLAEISAIDERRHLTAIGRQLARLPIDVQLARMLVEAQERHALRELLVVVAF
LSIQDPRERPADARQQADAAHAAFADPKSDFVGVLNLWREYTKAHEELTQSKLRDWCGRH
FLSFLRMREWRELHRQLLLVVAELGWTLDASAKSAPSPPRGEGWGEGTPSRKSPAQVRGA
PARASRSEAQGSRRARKAPGEPQPLTPALSPEGNEVEARPEQYEAIHRSLLAGLPTQVGH
KDEKGIYRSTRERRFQVFPGSALAKTPPAWLFAAQILDVGGRVWGMSCARVEPAWIEQQA
AHLVKGSCRDAHWSRKRGTVVAYEQVSLFGLTLVERRPVTFQKQDPALAHAIFLREALAR
GDLDARADFVRANQRVLDQAHEIEAKQRREGLLRGEDELAAFFDDKLPEDVASTRALDAW
YSRARPAEQAALRWSLDEVMAGGAGLDPKAFPATLDLPPQRYKLEYRFVPGDEADGVTLQ
LPLAMLNALPAARCEWLVPGLLADKVAELIRGLPKALRRNFVPAPDFARAFVEAEAPREQ
PLVPALAAFLKRATGVDAPPSEFAAVELPPHLKMRYRLHDERGRTLATGRDLAALRAQWE
TQAREAFSRKTDVELTREDVTRWDFEEIPAQVRSEGGLSAFPALVDLGEAVALRVFERHD
EARAAHLKGVERLLRNALASDMKQARRRLPIPNPLSLKYAPLGSVESLREDLVEGGFADL
LATHALDARTAGDFEALRTALARELFGAAVERLKLVEPAIEAQADLKPWLEPPLIGFARA
SYDDLREQLDALLAPGFARELPKARLAHYPRYLKAMRLRAERLRQDPAKDQQRMLQVLPY
WREYLRHHAGGAADLDELRWLIEEWRVSLFAQELKTAEPVSAKRLARALEALG
NT seq
4122 nt
NT seq
+upstream
nt +downstream
nt
atgaacgacacgccgcccgcatcctccgacgaagcccgcctgcgcgccttgcgcgaggcg
ctctcgggcgtgtccagtcgcgactttggccggctgctgggacggtggcgcgggctttcg
cgccagcccgatgcccgcaagctcgacgcactggcggccgacatcggcgtctcggcggcg
cggcgccaggcgcgcgccgcggccaagccggcgatccggctggacgaatcgcttccgatc
actacgcgcgccgacgagatcgtcgaactgatccgcaagcaccaggtcgtggtgatcgcc
ggcgaaaccggctcgggcaagaccacccagctgcccaagctgtgcctggccgccggccgc
ggcgaggcgggcatgatcggctgcacccagccgcgccgcctggctgcgcgctcggtcgcc
cgccgcgtggcggaggaactgggtacggcgctgggcgaacaggtcggtttccaggtgcgc
ttcaccgaccaggtctccgagcgcacgctggtcaagttcatgaccgacggcatcctgctg
gccgagacgcagggcgatccgtggttgtcgtcctacgacacggtgatcatcgacgaggcg
cacgagcgcagcctcaacatcgacttcctgctcggctacctcaagcgcctcgcccagaag
cggccggagctgaagatcatcgtcacctcggcgacgatcgacaccgcacgcttcgcccag
catttcaacgacgcgccggtggtgtcggtcgaggggcgcgcttatccggtcgaggtccgc
tggcgcgccgccgacgctctgggagcgcacccggtgcgcgaccgcggccctcacccgcgg
gacacgtccgaccgcgtccagcagggcagcgccgaacacatcggcctggtgctcgacgag
atcatggccgaccgcagcctcggcagcggccccggcgacgtactggtgttcctccccggg
gagcgcgagatccgcgacgcgcacctgctgctgtcgcgccgccagtaccgcgagaccgaa
gtgctgccgctgtatgcgcgcctgtcggcggccgaccaggatcgcgtgttcaagcccgga
ccgaagcggcgcatcgtgctggcgaccaacgtggccgaaacctcgttgaccgtgccgcgc
atccgctacgtcgtcgacaccggcagcgcgcgggtgatgcgctatagccagcgcagccag
ctggagcggctgcacgtcgagccggtctcgcaggcggcggccgaccagcgcaagggccgc
tgcgggcgcatcggcccgggcatctgctatcgcctgtacggcgagtcggatttcgagacc
cgtccgcgctacaccgacccggaactgctgcgctcgtcgctcgccaacgtcatcctgcgc
atgctctcgctgaagctcggcgaggtggaggattttcccttcctggaagcgcccgatccg
cggatggtggccgacggctaccggcgcctggcggagatctccgccatcgacgagcgccgg
cacctgaccgccatcggtcgccagctggcgcgactgccgatcgacgtgcagctggcgcgc
atgctggtcgaggcgcaggaacgccatgccctgcgcgagttgctggtggtggtggcgttc
ctgtccatccaggacccgcgcgagcggcccgccgatgcgcggcagcaggccgatgcggcg
catgcggcgtttgccgatcccaaatccgatttcgtcggcgtgctcaacctgtggcgcgag
tacacgaaggcgcacgaggagctgacccaatcgaaactgcgcgactggtgcgggcggcat
ttcctgtcgttcctgcgcatgcgcgagtggcgcgagctgcaccggcagttgttgctggtg
gtggcggagctggggtggacgctggacgccagcgcaaaatctgctccctctcccccccgg
ggagagggttggggtgaggggacaccctcgcgaaagagcccggctcaagtccgaggtgcc
ccagcacgcgcttcgcgcagcgaggcgcaagggtcgcgccgcgccaggaaagctccgggc
gagccccagcccctcaccccagccctctctccggaggggaacgaggtcgaggcgcgcccc
gaacaatacgaagcgatccatcgctcattgctcgccggtcttcctacccaggtcggccac
aaggacgagaagggcatctaccgctccacccgcgagcgccggttccaggtcttccccggc
tcggcgctggcgaagacgccgcccgcctggctgttcgccgcgcagatcctcgatgtcggc
ggtcgcgtctggggcatgagttgcgcgcgcgtggaaccggcctggatcgagcaacaggcc
gcgcacctggtcaagggcagttgccgcgatgcgcactggtcgcgcaagcgcggcacggtg
gtcgcctacgagcaggtcagcctgttcgggctgaccctggtcgaacgccgtccggtcact
ttccagaagcaggatccggcactcgcccatgcgatcttcttgcgcgaagcgctggcacgc
ggcgacctcgatgcgcgcgcggatttcgtgcgagccaaccagcgcgtgctcgaccaggcg
cacgagatcgaggccaagcagcgccgcgaaggcctgctgcgcggcgaggacgagctggcg
gcgttcttcgacgacaagttgccggaggacgttgccagcacgcgcgccctcgatgcctgg
tacagccgcgcgcgtccggccgagcaggccgcgctgcgctggtcgttggacgaggtgatg
gccggcggtgccgggctcgacccgaaggcgtttcccgccacgctcgaccttccaccacag
cgctacaagctcgaataccgcttcgttcccggcgacgaggccgacggcgtcaccctgcag
cttcccctggcgatgctcaacgcgctgcccgccgcccgctgcgaatggctggtgccgggc
ctgctggccgacaaggtggccgaactgatccgcggtctgcccaaggccctgcggcgcaac
ttcgtgcccgcgccggacttcgcgcgcgccttcgtggaagccgaggcgccgcgcgagcag
ccgttggtcccggcactcgccgctttcctcaagcgcgccacgggcgtggacgcgccgccc
tccgaatttgcggcggtggaactgccgccgcacctgaagatgcgctatcgcctgcacgac
gagcgcggcaggacgctggccaccggccgcgacctcgccgcattgcgcgcgcaatgggaa
acccaggcccgcgaagccttctcgcgcaagaccgacgtcgagctgacgcgcgaggacgtc
acccgctgggacttcgaggagattcccgcgcaggtgcgctccgagggcggcctgagcgcc
ttcccggcactggtcgacctgggcgaggcggtggcgctgcgcgtgttcgagcgccacgac
gaagcccgcgcggcgcatctgaaaggtgtcgagcggctgctgcgcaacgcgctggcaagt
gacatgaagcaggcccgtcggcgcctgcccatccccaatccgctgtcgctgaaatatgcg
ccccttggcagcgtggaatccctacgcgaggacctggtcgagggtggctttgccgacctg
ctggcgacgcacgccttggacgcgcgcacggccggcgacttcgaggcactacgcaccgcc
cttgcacgcgagctgttcggcgcagccgtcgagcgattgaagctggtcgaaccggccatc
gaggcccaggccgatctcaagccctggctggaacctccgctgatcggcttcgcccgcgcc
agctatgacgacctgcgcgagcagctcgacgcgctgctcgcgcccggcttcgcccgcgaa
ctgccgaaggcgcgcctggcgcactacccgcgctacctcaaggccatgcgcctgcgcgcc
gaacggctgcgccaggacccggccaaggaccagcagcgcatgctccaggtgctgccgtac
tggcgcgagtacctccggcaccacgccggcggcgcggcagacctcgacgaactgcgctgg
ttgatcgaggaatggcgcgtctcgttgttcgcgcaggaactgaagaccgccgaaccggtg
tcggccaagcgcctcgcgagggcgctggaggccctggggtga
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