Frateuria edaphi: LQ772_08910
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Entry
LQ772_08910 CDS
T08888
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
fed
Frateuria edaphi
Pathway
fed03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fed00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
LQ772_08910 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fed03400
]
LQ772_08910 (sbcB)
Enzymes [BR:
fed01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
LQ772_08910 (sbcB)
DNA repair and recombination proteins [BR:
fed03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
LQ772_08910 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LQ772_08910 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LQ772_08910 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
UGB47383
LinkDB
All DBs
Position
1884424..1885872
Genome browser
AA seq
482 aa
AA seq
DB search
MQTFLWHDYETFGADSRRDRPAQFAGIRTTADLEIVGEPVMFFARPPRDMAPDPDACLIT
GITPQQAEREGVCEAEFAARVHEQMALPGTCGVGYNSLRFDDEFTRQLLYRNFFDPYGRE
WENGNSRWDLIDLVRMCQALRPEGIAWPTREDGTPSFRLEHLAAANHLKQERAHDALSDV
YALIDLARLIRVRQPRLWDWHFELRRKQKVFGLLDVAGMTPLVHVSSRYPASRHCLAVIA
PLAPHPSRPGEVIIYDLDADPATWLDLDEDDIADRIFTARADLPEGIERIPLRTVRANRA
PALAPLSVLRDVDHGRLQLDLERCLRHHALLRATEGLVDKLRHVFARASEMPAPEDPELA
LYSGFLPDADKRLLAEVRATPPEQLGRRNFPFRDPRYPELLFRYRARNWPHSLDAGEQAR
WEAFRLARLTRPTALTARTLDDYFARIATLRPERPDQAVLLDQLEAWGRELAPIPAMAAD
LL
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgcagaccttcctctggcacgactacgaaaccttcggcgcggacagccggcgcgaccgg
ccggcgcagttcgcgggcatccgcaccacggcggacctggagatcgtcggcgagccggta
atgttcttcgcccgccccccgcgcgacatggcgccggacccggacgcctgcctgatcacc
ggcatcacgccgcagcaggccgagcgcgaaggcgtctgcgaggccgagttcgccgcccgc
gtgcacgaacaaatggccctgcccggcacctgcggcgtgggctacaactcgctgcgcttc
gatgacgaattcacccggcagctgctgtaccggaatttcttcgatccgtacggccgcgaa
tgggagaacggcaactcgcgctgggacctgatcgacctggtgcgcatgtgccaggcgctg
cggcccgagggcatcgcctggcccacgcgcgaggacggcacgcccagcttcaggctcgaa
cacctggccgcggccaaccatctcaaacaggagcgcgcacacgatgccctgtccgatgtc
tacgcgctgatcgacctggcgcggctgattcgcgtgcgccagccgcggctgtgggactgg
cacttcgagctgcgtcgcaagcagaaggtcttcggcctgctcgacgtggcgggcatgacg
ccgctggtgcacgtgtcctcgcgctacccggccagccgccattgcctggcggtgatcgca
ccgctggcgccgcacccgtcgcggcccggcgaagtgatcatctacgacctggacgccgat
ccggcgacgtggctcgacctggacgaggacgacatcgccgaccgcatattcaccgcgcgg
gcggaccttcccgaggggatcgagcgcatcccgctgcgcaccgtgcgcgccaaccgcgca
cccgcgctggcgcccttgtcggtcctgcgcgatgtggaccatggccgtctgcagctcgac
ctggagcgatgcctgcgccaccacgcgctgctgcgcgccaccgaaggcctggtcgacaaa
ctgcgccacgtgttcgcccgcgcctccgagatgcccgcgccggaagatcccgaactcgcc
ctttacagcggtttcctgcccgacgccgacaagcgcctgctggccgaggtccgcgcaacg
ccccccgaacaactgggccggcgcaactttccgttccgcgacccgcgttacccggaactg
ctgttccgctaccgagcgcgcaattggccccacagcctggatgccggggagcaagcgcgc
tgggaagccttccggctggcgcgcctcactcgccccaccgcgctgaccgcgcgcacgctc
gatgactatttcgcgcgcatcgccaccttgcggcccgagcgccccgaccaggccgtcctg
cttgaccagctcgaagcctggggccgcgaactcgccccgatcccggccatggctgcagac
ctcctgtag
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