Frateuria edaphi: LQ772_09065
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Entry
LQ772_09065 CDS
T08888
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
fed
Frateuria edaphi
Brite
KEGG Orthology (KO) [BR:
fed00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
fed03009
]
LQ772_09065 (rlmD)
Enzymes [BR:
fed01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
LQ772_09065 (rlmD)
Ribosome biogenesis [BR:
fed03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
LQ772_09065 (rlmD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
MTS
PCMT
Methyltransf_23
PabTrmU54_TRAM_dom
Methyltransf_11
Cons_hypoth95
RrnaAD
TRM5-TYW2_MTfase
Methyltransf_15
Methyltr_RsmB-F
Motif
Other DBs
NCBI-ProteinID:
UGB44159
LinkDB
All DBs
Position
complement(1915210..1916523)
Genome browser
AA seq
437 aa
AA seq
DB search
MKEFEATITDLGHDGRGVARIDGKTVFVSGALLGEQVRLGIRKRHRNFDEAETLEVLERS
PHRVEPRCVHFGQCGGCSLQHLDAPAQIQAKQRVLSDNFARIGKVEPRRWLEPLTDTPWG
YRRKGRLSVRAVAKKGRVLVGFREESNPRFVADISHCDVVHPMLGGRIGQLAELLGGMDA
ANDIPQIEFAAGDDTVALVFRHLKPLSEHDTQALVAFGQTHGFAIYLQPGGVSSVHPLWP
EQPRLAFRLPAGEGVADVELEFQPLDFVQVNAGMNRRMLALTMELLDPQPTDRVLDLFCG
LGNFTLPLARRVAEVAGVEGEHGLVERAGANAARNDIANARFHVANLFEDQRGSAWARAG
WDKILLDPPRAGAEQVLEYLPRKGTNRIVYVSCHPASLARDAGLLVHRHGFDLTAAGVMD
MFPHTAHVESIAVFERR
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaattcgaagccaccatcaccgacctgggccacgacggccgcggcgtcgcccgc
atcgacggcaagaccgtgttcgtcagcggcgcgctgcttggggagcaggtccgcctcggg
atccgcaagcgccaccgcaacttcgacgaggcagaaacccttgaggtactggagcgctcg
ccgcatcgggtcgaaccgcgctgcgtgcatttcggccagtgtggcggttgctcgctgcag
cacctggacgcaccggcgcagatccaggccaagcagcgcgtgctgtcggacaacttcgcg
cgcatcggaaaggtcgagccgcgacgctggctggaaccgctcaccgacacgccctggggt
tatcgccgcaaggggcgactgtcggtgcgtgcggtggccaagaagggccgcgtgctggtg
ggttttcgcgaagagtccaatccacgcttcgtggccgacatcagccattgcgacgtcgtg
catccgatgctgggcggccggattggccagctcgccgagctgctcggcggcatggacgcg
gccaacgatatcccgcagatcgaattcgccgcgggcgacgataccgtggcgctggtgttc
cggcacctgaagccgctcagtgagcacgacacccaggcgctggtcgcatttggccagacg
catggctttgcgatctatctgcagccaggcggcgtcagcagcgtccacccgttgtggccc
gaacagccacgcctggccttccggctgccggccggcgagggcgtggccgatgtcgaattg
gagttccagccgctggatttcgtgcaggtcaacgcgggcatgaaccggcgcatgctggcg
ctcacgatggaactgctcgacccgcagccgactgaccgcgtgctcgaccttttctgcggc
ctgggcaacttcacgctgccgctcgcacggcgcgtggccgaggtcgccggcgtggaaggc
gaacacgggctggtcgagcgcgccggcgccaacgccgcccgcaacgacatcgccaatgcg
cggttccacgttgccaatctgttcgaggaccagcgcggcagcgcctgggcacgcgccggg
tgggacaagatcctgctcgacccgccccgcgcgggcgccgagcaggtactggagtacctg
ccgcgcaagggcaccaaccggatcgtctacgtctcctgccacccggcctcgctcgcacgc
gacgccggcctgctggtgcaccgccatggcttcgacctcacagccgctggcgtcatggac
atgtttccgcataccgcgcacgtggaatccatcgcggtgttcgagcgccgctga
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