Frateuria edaphi: LQ772_09780
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Entry
LQ772_09780 CDS
T08888
Name
(GenBank) HAMP domain-containing protein
Organism
fed
Frateuria edaphi
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAMP
HAMP_2
Response_reg
HATPase_c
HisKA
GAF_2
GAF
ATG14
Motif
Other DBs
NCBI-ProteinID:
UGB44295
LinkDB
All DBs
Position
2066564..2071915
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AA seq
1783 aa
AA seq
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MSAEIRLESLDRAQLIAALRSLRSGDFSVRLPESGPGADVEVARLFNEVVGFNRQLTDEL
ERLSIVVGKEGRINQRGRVKAATGGWESAIRSVNDLIEDMVQPTAEVARVIGAVAKGDLS
QTMTVEIDGRPLRGEFLRIGKVVNTMVAQLASFASEVTRVAREVGTEGKLGGQATVKGVA
GTWKDLTDNVNAMATNLTGQVRNIAEVTTAVASGDLSKKITVEVKGEILELKNTINTMVD
QLNSFASEVTRVAREVGTEGKLGGQAQVPGVAGTWKDLTDNVNLMADNLTGQVRNIAEVT
TAVASGDLSKKITVEVKGEILELKNTINVMVDQLNAFASEVTRVAREVGTEGKLGGQAQV
PGVAGTWKDLTDNVNLMGDNLTGQVRNIAEVTTAVARGDLSKKITVEVKGEILELKNTIN
VMVDQLNAFASEVTRVAREVGTEGKLGGQATVPGVAGTWADLTDNVNLMADNLTGQVRNI
AEVTVAVARGDLSKKITVDVKGEILTLKDTINVMVDQLNSFASEVTRVAREVGSEGKLGG
QAQVPGVAGTWKDLTDNVNLMAGNLTGQVRNIAEVTTAVARGDLSKKITVDVKGEILELK
NTINVMVDQLNSFASEVTRVAREVGSEGKLGGQAQVPGVGGTWKDLTDNVNAMAANLTGQ
VRNIAEVTTAVALGDLSKKITVDVKGEILELKNTINTMVDQLNSFASEVTRVAREVGTEG
KLGGQAQVRGVAGTWKDLTDNVNLMADNLTGQVRNIADVTTAVARGDLSKKITVDVKGEI
LALKDTINVMVDQLNGFASEVTRVAREVGTEGKLGGQAQVPGVGGTWKDLTDNVNLMATN
LTNQVRGIADVVTAVAQGNLKRKLQVDAKGEIAALADTINGMIETLATFADQVTNMAREV
GIEGKLGGQARVPGAAGLWRDLTDNVNQLAANLTNQVRSIADVATAVTKGDLSRSIAVAA
SGEMAALKDNINEMIRNLKDQTLKNAEQDWLKTNLARFSRMLQGVRDLATVSNLIMSELA
PLVNAQYGVFYVARREDNETVLDLVASYGAESRDQLKPTFKLREGLVGQCAADKRAMLMT
DIPENFIRIGSGLGHAPPANVAILPALFEDDVKAVIELASFNRFNETHQNFLDQLMESVG
IVLNTIAATMRTEGLLKQSQLLTQELQARQTELTTKQEELHATNEELQEKAQLLENEKKQ
VEAKNFEIDMARRAVEEKAEQLALTSKYKSEFLANMSHELRTPLNSLLILSRLLADNPQG
NLSEKQTEFARTIHSAGSDLLSLINDILDLSKIESGTVSIEIGDMPLSGLKQHMERTFRQ
LASDKNLDFKVEFDPALPASIRTDEKRLQQVVLNLLSNAFKFTGEGSVTLAVRPVSGGWS
TNHPVLRYAEHAIEIAVTDTGIGIPKEKQKLIFEAFQQADGTTSRKYGGTGLGLSISREI
ARLIGGELQVRSTPGVGSTFTLFVPLEALSPVSVPLGTSNARYDNSGATVPGALPAPMEV
TDDRDALGDSPFVLIVEDDPTFASILLDIARDAGLKGVVSTAGAGTLTLARKLQPHAITL
DLGLSDIDGFVLLDLLKHDPQTMHMPIQVISGADKLGSALSLGAFGVTEKPAAPEQLADV
FKRLAGHIRQTPAPQAMPEATSGMRPVPELGGARILIVDDDIRNIYSLTSVLESHGVEVM
HAEGGREGIAILEQTPGIDIALIDIMMPEMDGYETMQQIRAQPALAEVPLIAVTAKAMKG
DRQKCLDAGASDYIAKPVDIELLLALLRVWLARSRERSPAIAL
NT seq
5352 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgccgaaattcgcctggaatcgctggaccgtgcccagctcatcgctgccctgcgc
agtcttcgcagcggcgacttcagcgtgcgcctgcccgagagcggccccggcgccgacgtc
gaagtggcgcggctcttcaatgaagtcgtcggtttcaaccggcagctcaccgacgaactg
gaacgcctgtcgatcgtggtcggcaaggaaggccgcatcaaccagcgcggccgcgtcaag
gcggccaccggcggctgggaaagcgcgatccgctcggtcaacgacctgatcgaggacatg
gtccagcccactgccgaagtggcgcgcgtgatcggcgcggtggccaagggcgacctgtcc
cagaccatgacggtggagatcgatggacgcccgctgcgcggcgagttcctgcgcatcggc
aaggtggtgaacacgatggtggcgcagctcgcctcgttcgcctccgaggtgacccgcgtg
gcccgcgaagtgggtaccgagggcaagctgggtggccaggcgaccgtgaagggcgtggcc
ggcacctggaaggacctgaccgacaacgtcaacgccatggccaccaacctgaccggccag
gtgcgcaacatcgcggaggtgaccacggccgtggcctccggcgacctctccaagaagatc
acggtggaggtcaagggcgagatcctcgagctcaagaacaccatcaatacgatggtggac
cagctcaactccttcgcttcggaagtgacccgcgtggcgcgcgaggtgggtaccgaaggc
aagcttggcggccaggcccaggtgcctggcgtcgcgggtacgtggaaggacctgaccgac
aacgtgaacctcatggccgacaacctcaccggccaggtgcgaaacatcgccgaggtgacc
acggcggtggcttcgggcgatctttccaagaagatcacggtggaggtcaagggcgagatc
ctggagctcaagaacaccatcaacgtgatggtggaccagctgaacgccttcgcctcggaa
gtgacccgcgtggcccgcgaagtgggtaccgaaggcaagcttggcggccaggcgcaggtg
ccgggcgtcgccggcacctggaaggacctgaccgacaacgtgaacctgatgggtgacaac
ctcaccggccaggtgcgaaacatcgccgaggtgaccaccgcggtggcccgtggcgacctt
tccaagaagatcacggtggaggtcaagggcgagatcctggagctcaagaacaccatcaac
gtgatggtggaccagctgaacgcgttcgcttcggaagtgacgcgcgtggcgcgcgaagtg
ggtaccgaaggcaagcttggcggccaggccacggtgcccggcgtggccggtacctgggcg
gacctgaccgacaacgtgaacctcatggccgacaacctcaccggccaggtgcgaaacatc
gccgaggtcacggtggcggtggcgcgcggcgatctttccaagaagatcacggtggacgtc
aagggcgagatcctcaccctcaaggacaccatcaacgtgatggtggaccagttgaactcc
ttcgcctcggaagtgacccgcgtggcgcgcgaggtgggttcggaaggcaagctcggcggc
caggcgcaggtgcccggcgtcgccggcacctggaaggacctcaccgacaacgtgaacctg
atggccggcaacctcaccggccaggtgcgaaacattgccgaggtaaccaccgcggtggcc
cgcggtgacctttccaagaagatcacggtggacgtcaagggcgagatcctggagctcaag
aacaccatcaacgtgatggtggaccagctcaactccttcgcctcggaagtgacccgcgtg
gcgcgcgaggtgggttcggaaggcaagctcggcggccaggcgcaggtgcccggcgtgggc
ggtacctggaaggacctcaccgacaacgtgaacgcgatggccgccaacctgaccggccag
gtgcgaaacatcgccgaggtgacgaccgcggtggcgctgggcgatctttccaagaagatc
accgtggacgtcaagggcgagattctcgaactcaagaacaccatcaacacgatggtggac
cagctcaactccttcgcctcggaagtgacccgcgtggcgcgcgaggtgggtaccgaaggc
aagctcggtggccaggcgcaggtgcgcggcgtggcgggcacctggaaggacctcaccgac
aacgtgaacctgatggccgacaacctcaccggccaggtgcgaaacatcgccgacgtgacg
accgcggtggcgcgcggcgacctttccaagaagatcacggtggacgtcaagggcgagatc
ctcgcgctcaaggacaccatcaacgtgatggtggaccagttgaacggcttcgcctccgag
gtgacccgcgtggcgcgcgaggtgggtaccgaaggcaagctcggtggccaggcgcaggtg
cccggcgtgggcggcacctggaaggacctcaccgacaacgtgaacctgatggccaccaac
ctgaccaaccaggtgcgcggcatcgccgacgtcgtgaccgcggtggcgcaaggcaacctc
aagcgcaagctgcaggtggacgccaagggcgagatcgcggcgctggccgacaccatcaac
ggcatgatcgagacgctcgccaccttcgccgaccaggtgaccaacatggcgcgcgaggtg
ggtatcgagggcaagctcggcggccaggcgcgcgtgcccggcgccgcgggtttgtggcgc
gacctcaccgacaacgtgaaccagctggccgcgaacctcaccaaccaggtgcgctcgatc
gccgacgtggcgaccgcggtgaccaagggcgacctctcgcgttcgatcgcggtggcggcc
tccggcgagatggccgcgctgaaggacaacatcaacgagatgatccgcaacctcaaggac
cagaccttgaagaatgcggaacaggactggctcaagaccaacctcgcccgcttctcgcgc
atgctgcagggcgtgcgcgacctggcgacggtatcgaacctgatcatgtccgagctcgcg
ccgctggtgaacgcgcagtacggcgtgttctacgtggcccgccgcgaggacaacgaaacg
gtgctggacctggtcgccagctacggcgccgagagccgcgaccagttgaagcccaccttc
aagctgcgcgagggcctggttggccaatgcgcggccgacaagcgggcgatgctgatgacc
gacatcccggagaacttcatccgcatcggttcgggtctgggccacgcgccgccggccaac
gtggcgatcctgccggcgttgttcgaggacgacgtcaaggcggtcatcgagctggcttcg
ttcaaccgtttcaacgagacccaccagaacttcctcgaccagctgatggaatcggtcggc
atcgtgctcaacacgatcgccgcgacgatgcgcaccgaaggcctgctcaagcagtcccag
cttctcacccaggagctgcaggcgcgccagaccgagctcaccacgaagcaggaagagctg
cacgccaccaacgaggagctgcaggagaaggcccagctgctggagaacgaaaagaagcag
gtggaggccaagaacttcgagatcgacatggcccgccgcgcggtggaggaaaaggccgag
cagctggccctcacctccaagtacaagtccgagttcctggccaacatgagccacgagctg
cgcacgccgctcaattcgctgctgatcctctcgcgcctgctggcggacaatccgcagggc
aacctgagcgagaagcagaccgagttcgcccgcaccatccattcggccggctcggacctc
ctgagcctgatcaacgacatcctggacctttccaagatcgagtccggcacggtgtccatc
gagatcggcgacatgcccttgagcgggctcaagcagcacatggagcgcaccttccggcag
ctggccagcgacaagaacctggatttcaaggtggagttcgacccggccctgcccgcctcc
atccgcaccgacgagaagcgcctgcagcaggtggttctcaacctgctctccaacgccttc
aagttcaccggcgagggcagcgtcacgctggccgtgcggccggtgtccggcggctggagt
accaaccacccggtgttgcgctatgccgaacacgctatcgagatcgccgtcaccgacacc
ggcatcggcattcccaaggaaaaacagaaactcatcttcgaagcgttccagcaggccgac
ggcaccaccagccgcaagtacggcggcaccggcctgggcctctcgatcagccgcgagatc
gcgcgcctgatcggcggtgaactgcaggtgcgctcgacccccggcgtgggctcgaccttc
accctgttcgtaccgctggaggcactctcccccgtatccgtgccgctggggaccagcaac
gcccgctacgacaacagcggcgccacggtgccgggcgccctgcccgcgccgatggaggtc
accgacgatcgcgatgcattgggcgactcgccgttcgtgctgatcgtggaggacgacccg
accttcgcctcgatcctgctggacatcgcccgcgacgccggcctcaagggcgtggtttcc
accgccggcgccggcacgctgacgctcgcgcgcaagctgcagccgcatgcgatcacgctg
gaccttggcctgtccgacatcgacggcttcgtgctgctggacctgctcaagcacgatccg
cagaccatgcacatgccgatccaggtgatctccggcgcggacaagcttggttcggcgctc
agcctgggcgcgttcggcgtcaccgaaaagccggccgcgcccgagcaactggccgacgtg
ttcaagcgcctggccggccacatccgccagacgcccgcgccgcaggcgatgccggaagcc
accagtggcatgcgtcccgtgcctgagctgggtggcgcgcgcatcctcatcgtggacgac
gacatccgcaacatctattcgctgaccagcgtgctggaaagccacggcgtggaagtcatg
catgccgagggcggccgcgagggcatcgcgattctggaacagacgcccgggatcgacatc
gccctgatcgacatcatgatgccggagatggacggctacgaaaccatgcagcagatccgc
gcgcagccggcgctggccgaggtgcccctgatcgcggtcaccgccaaggcgatgaagggc
gaccgtcagaagtgcctggacgcgggcgcttcggactacatcgccaagccggtcgacatc
gaactgctgctggcgctgcttcgcgtgtggcttgcccgctcgcgcgagcggtcgcccgcc
atcgcgctgtag
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