Frateuria edaphi: LQ772_11040
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Entry
LQ772_11040 CDS
T08888
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
fed
Frateuria edaphi
Pathway
fed03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fed00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LQ772_11040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fed03019
]
LQ772_11040
03009 Ribosome biogenesis [BR:
fed03009
]
LQ772_11040
Enzymes [BR:
fed01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LQ772_11040
Messenger RNA biogenesis [BR:
fed03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LQ772_11040
Ribosome biogenesis [BR:
fed03009
]
Prokaryotic type
rRNA helicases
LQ772_11040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
adh_short
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UGB44524
LinkDB
All DBs
Position
2361700..2363547
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AA seq
615 aa
AA seq
DB search
MSSPVPGPTPADHDPAPAGFAALALRPEIQQALADVGYESPSPIQAATIPPLLEGRDVLG
QAQTGTGKTAAFALPILSRIEARPGKPQALVLAPTRELAIQVAEAFQRYAAHIPGFQVLP
IYGGQSYGPQLHALRRGVHIVVGTPGRVIDHLDKGTLDLSDLKYLVLDEADEMLRMGFID
DVEKVLEATPPTRQVALFSATMPAPIRKIAQRHLKEPVEVTIKSSTTTAANIRQRYWFVS
GMHKLDALTRILEAEPFDAMIIFARTKQATEELAEKLTARGLAAAAINGDIAQPQRERVI
QQLKEGKLDILVATDVAARGLDVERISHVFNYDIPYDTESYVHRIGRTGRAGRSGEAILF
VTPREKGMLRAIERATRQPIEEMKLPTVEAVNDVRIARFKQRITDTMAQGELGQFQQLIE
QYEQEHNVPALEIAAALARIAQGDRPLLLAPPPKREYERREPAPHEARERDGERRPPHER
KPREAREGAPPRNFDSRPPRPHSAPEPGKRTYRIEVGHEHGVKPGNIVGAIANEAGLESG
FIGRVSIRGDYSLIDLPDGMPKEVFDHLKKVWVSQQQLRISEWDGTEEPAGATPPRRPRP
GGFKPRPGGKPPRHK
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcccccgttccaggtcccacgccggccgaccacgacccggcgccggccggtttt
gccgcgctcgcgctgcgtcccgaaatccagcaggcgctcgccgacgtcggctacgagtcg
ccctccccgatccaggccgccacgatcccgccgctgctcgaaggccgcgacgtgctcggg
caggcgcagaccggcaccggcaagaccgccgcgttcgcgctgccgatcctctcgcgcatc
gaggccaggcccggcaagccgcaggcgctggtgctggcgcccacgcgcgaattggccatc
caggtggccgaagcgttccagcgctacgccgcgcacattcccggcttccaggtgctgccg
atctatggcggccagagctacggcccgcagttgcacgcgcttcgccgcggcgtgcacatc
gtggtcggcacgcccggccgcgtgatcgaccacctggacaagggcacgctggatctttcc
gacctcaagtacctggtgctcgacgaagccgacgagatgctccgcatgggcttcatcgac
gatgtcgagaaagtcctcgaggcgacgccgccgacgcgccaggtcgcgctgttctccgcg
accatgccggcgccgatccgcaagatcgcgcagcgccacctgaaggagccggtcgaggtc
accatcaagtcctcgaccaccaccgcggcgaacatccgccagcgctactggttcgtctcg
ggcatgcacaagctcgatgcgttgacccgcatcctggaagccgagccgttcgacgcgatg
atcatcttcgcgcgcaccaagcaggcgaccgaggaactggccgagaagctcaccgcccgc
ggactggccgccgccgcgatcaatggcgacatcgcccagccgcagcgcgagcgcgtgatc
cagcagctcaaggaaggcaagctggacatcctggtcgccaccgacgtggccgcgcgcggt
ctggacgtcgagcgcatcagccacgtgttcaattacgacatcccctacgacaccgaaagc
tacgtgcaccgcatcggccggaccggccgcgcgggtcgcagcggcgaggcgatcctgttc
gtcacgccgcgcgagaagggcatgctgcgcgcgatcgagcgagccacgcgccagccgatc
gaagagatgaagctgcccaccgtcgaggcggtcaacgatgtgcgcatcgcccgcttcaag
cagcgcatcaccgacaccatggcgcagggcgaactgggccagttccagcagttgatcgag
cagtacgagcaggagcacaacgtgccggcgctcgagatcgccgccgcgctggcgcggatc
gcacagggcgaccgcccgctgctgctggcgccgccacccaagcgcgagtacgagcgccgc
gagccggcgccgcatgaagcgcgcgagcgcgatggcgaacgccgcccgccgcacgagcgc
aagccgcgcgaggcccgcgaaggcgccccgccgcggaacttcgacagccgcccgccgcgc
ccgcacagcgcaccggagccgggcaagcgcacctatcgcatcgaggtcggccacgaacat
ggcgtcaagcccggcaacatcgtcggtgccattgccaatgaagccggcctggaaagcgga
ttcatcggccgcgtcagcatccgcggcgactacagcctgatcgacctgcccgacggcatg
cccaaggaggtgttcgatcacctcaagaaggtctgggtaagccagcagcagctgcgcatc
agcgaatgggacggcacggaagagccggccggcgccacgccaccgcgccggccacggccg
ggcggattcaagccccgcccgggtgggaagccgccgcggcacaaatga
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