Frateuria edaphi: LQ772_11290
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Entry
LQ772_11290 CDS
T08888
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
fed
Frateuria edaphi
Pathway
fed03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
fed00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
LQ772_11290 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fed03400
]
LQ772_11290 (ligD)
Enzymes [BR:
fed01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
LQ772_11290 (ligD)
DNA repair and recombination proteins [BR:
fed03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
LQ772_11290 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
UGB44572
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All DBs
Position
2411423..2413981
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AA seq
852 aa
AA seq
DB search
MSLREYDRKRRFDTTPEPRPEGSAAQGGRPIFVVQLHHASRRHYDFRLQVGDTLKSWACP
KGPSYDPNVKRLAVEVEDHPISYAKFQGDIPAGAYGGGHVDTFDSGVWSTQYDPEAQLEK
GHLRFELFGTRLKGSWHLVRSGKPAKQPQWFLMHDKDAYASDVEADDLLDARMIASTKAA
AGRSGGAKEVAATLDTRKRKQVPVAGHPASKAGKLAAAAEGAKKAKASTDFFKPELATLR
ENPPVGEQWLHEVKWDGYRILATMAKGRVELWSRNGLSWTDRIPDIRQAIESLGVDSARF
DGELIALNAEGQADFNALQKTLSGEASAPLAYMLFDVPYLEGYDLSRTPLHARKAILEAL
LEDPPTHLSYSSHVVGNGDQVFAMASEQKLEGILSKRVESHYRAGRGDDWLKIKRVESDE
FAVVGYTAPKGGRQGFGALLLAKPAAEGGWHFMGQVGSGFSHKQLLDLSRTLATGGGSKP
IVRNPQDAPRGVKWIEPTAVAEVNFRGIGNQGLLRQPSLKTMRADKTPADLHDSDRAAPV
AEPPATRRKSSTRATQAAEPAGITITHPERVVYPADGYTKQDVADYYRTVMEWFLPGVID
RPTSIIRFPDGIEKPSFFQKHIPSGGLKYVGSVKLKEETGAAAVYLYPQSADSVMELVQY
GTLEFHPWGAKVQSPDLADRVVFDLDPGPDVAWERVVAAARLVRKLLADLELESFLRTTG
GKGLHVVVPLDPPSDWGTVKQFAQGFAGALAGIHPLEFVAVSTKSIRNQKIFVDYLRNGR
GATAVASYSLRGRPGAPVAVPLRWEELGKIKSGAQFDIRTLPARLKRLRKDPWAGIDQVR
QSLGNVFEKLGG
NT seq
2559 nt
NT seq
+upstream
nt +downstream
nt
ttgagtctcagggaatacgatcgcaagcgtcgcttcgacaccacgccggagccccggccg
gagggttcggcggcgcagggcgggcggccgatcttcgtcgtgcagctgcatcacgccagc
cggcggcactacgacttccggctgcaggtcggcgacacgctcaaatcctgggcctgcccc
aagggacccagctatgacccgaacgtgaagcgcctggccgtggaggtggaagaccacccg
atctcctacgccaagttccagggtgacattcccgcgggcgcgtacggcgggggccacgtc
gacaccttcgacagcggcgtgtggtcgacgcagtacgacccggaggcgcaactggaaaaa
ggccacctgcgcttcgaactgttcggcacgcgactcaagggcagctggcacctggtgcgc
agcggcaagccggcgaagcagccgcaatggttcctgatgcacgacaaggacgcctacgcc
agcgacgtggaagccgacgacctgctggacgcgcggatgatcgccagtaccaaggccgcc
gccggccgttccggcggcgcgaaggaagtggccgcgacgctggacacgcgcaagcgcaag
caggttccggtcgccggtcacccggccagcaaggcgggcaagctggccgctgccgcggag
ggcgcgaagaaggccaaggccagcactgacttcttcaaacccgagctggcgaccttgcgc
gagaacccaccggtcggcgagcagtggctgcacgaagtgaagtgggacggttaccgcatc
cttgccacgatggccaagggccgggtggagttgtggtcgcgcaatgggctgtcctggacg
gacaggatccccgacatccgccaggcgatcgaatcactgggcgtggactcggcccgcttc
gacggcgaactgatcgccctgaacgcggaaggccaggccgacttcaacgcgctgcagaag
acgctctccggcgaggccagcgcgccgctcgcctacatgctgttcgacgtgccgtacctg
gaaggctacgacctctcccgaaccccgctgcacgcgcgcaaggcgatcctcgaagcattg
ctcgaggatccgccgacgcacctttcctacagcagccacgtggtgggcaacggcgaccag
gtgttcgccatggccagcgagcagaagctcgagggcatcctcagcaagcgcgtggagtcg
cactaccgcgccggccgcggcgacgactggctgaagatcaagcgcgtggagtcggacgaa
ttcgcggtggtcggctacaccgcgcccaagggcgggcgccagggcttcggcgcactgctg
ctggcgaagccggcagccgagggcggttggcacttcatgggccaggtgggcagcggcttc
agccacaagcagttgctggacctcagccgcacgctggccaccggcggtggcagcaagccg
atcgtgcgcaatccccaagacgccccacgcggggtgaagtggatcgagcccaccgcggtg
gcggaagtgaacttccgcggcatcggcaaccagggcctgctgcgccagccgagcctgaag
acgatgcgcgcagacaagacgcctgccgacttgcacgacagcgaccgcgcggcacccgtg
gccgaaccgcccgcgaccaggcgcaaatcatcgacgcgcgcaacgcaggcagccgagccg
gccggcatcaccatcacccaccccgagcgtgtggtctacccggccgacggctacaccaag
caggacgtggccgactactaccgcacggtgatggagtggttcctgcccggcgtgatcgac
cggcccacctcgatcatccgcttcccggacggcatcgaaaaaccttcgttcttccagaag
cacattccttcgggcggcctgaaatacgtgggcagcgtgaagttgaaggaggaaaccggc
gccgccgccgtctacctgtatccgcaatccgccgattcggtgatggaactggtgcagtac
ggcacgctggagttccatccctggggtgccaaggtacagtcgccggacctggccgaccgc
gtggtgttcgacctggaccccggcccggacgtggcctgggagcgcgtggtcgccgccgcg
cggctggtgcgcaagctgctcgccgacctggagctcgaatcgttcctgcgcaccaccggc
ggcaagggcttgcacgtggtggtgccgctcgatccgccgtcggactggggcacggtcaag
cagttcgcgcagggtttcgccggcgcgctggcgggcatccatccgctggagttcgtcgcg
gtcagtaccaagtcgatacgcaaccagaagatcttcgtggactacctgcgcaatggccgc
ggcgcgaccgcggtggcctcctactcgctgcgcgggcgcccgggcgcgccggtggcggtg
ccgctgcgctgggaggaactgggcaagatcaagagcggcgcgcaattcgacatccgcacc
ctgcccgcccggctcaagcgcctgcgcaaggacccgtgggccggcatcgaccaggtcagg
cagagcctgggcaacgtgttcgagaagctcggcggctga
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