Frateuria edaphi: LQ772_12775
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Entry
LQ772_12775 CDS
T08888
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
fed
Frateuria edaphi
Pathway
fed03030
DNA replication
fed03430
Mismatch repair
fed03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
fed00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LQ772_12775 (dnaE)
03430 Mismatch repair
LQ772_12775 (dnaE)
03440 Homologous recombination
LQ772_12775 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fed03032
]
LQ772_12775 (dnaE)
03400 DNA repair and recombination proteins [BR:
fed03400
]
LQ772_12775 (dnaE)
Enzymes [BR:
fed01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LQ772_12775 (dnaE)
DNA replication proteins [BR:
fed03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LQ772_12775 (dnaE)
DNA repair and recombination proteins [BR:
fed03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LQ772_12775 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
HROB
Motif
Other DBs
NCBI-ProteinID:
UGB44859
LinkDB
All DBs
Position
2733201..2736743
Genome browser
AA seq
1180 aa
AA seq
DB search
MMSARFVHFHLHSEYSLVDSTIRIKALVDACVREGMPAVALTDDSNMFALVKFYKACSGA
GIKPIGGCDLWVGSPDDPRPWRLTLVCQNREGYLNLSRLVSRAWRDGQHGGKALIEASWL
TPDATAGLIALLGRESEVGRIAVSHGVDPGVARLQPLARLFPDRLYLELTRCGREGEEAW
NTAALALGDALELPLLASNDVRFLKQDDFEAHEARVCINQGRVLADPKRPRDYSDQQYLK
SPTQMAELFADLPEALENTVELARRCNLELKFGTYYLPDFPVPQGYDLDSYIRETARAGL
KERLAANPLAAGYTLADYEARLERELDVIIEMGFPGYFLIVADFINWGKQNGIPVGPGRG
SGAGSLVAWVLKITDLDPLQFDLLFERFLNPERVSMPDFDIDFCMDRRDEVIDYVARKYG
REHVSQIITYGSMAAKAVLRDSGRVLGMGYNAVDKIAKLIPPRPLDLTLSDALGRSEKSR
KEPDRVVREFCELYEQDEEARTLVDLALKLENLTRNVGKHAGGVVIGPRPLTEFAPMYCE
PGGGGMVTQYDKDDVEAVGLVKFDFLGLRTLTIIDWAVKAINVRRAQAGEPPLDISALPL
DDPAPYELLKKAQTVAVFQLESSGMQRMLKDAKPDRFGDIVALVALYRPGPMDLIPSFVA
RKHGREDVEYPDPRVEPILKETYGIMVYQEQVMQMAQIVGGYTLGGADLLRRAMGKKKVE
EMVKHRATFREGAAKDGLPGDKADAIFDLMEKFAGYGFNKSHAAAYALVSYQTAWLKAHY
PAEFMAATISSDMDNTDKAVTFLDESRAIGLTILPPDVNASDFMFVAVEPKVIRYGLGAI
KGVGQGACESIVEERRRGGPYTDLADFCRRVDSAKLNRRVLEALILSGSLDALAPNRASL
MLQLPDAIKAAEQHLRDKQSGQNDMFGALMGTSTPAVQIELPTAPEWPLEQKLQGERETL
GHYLSGHPTDPWREELAQLSTCPLGEIADRYQPPRPRKNDGEENRFRRGPDTPWTVAGMV
TAVRKRGDSDAFVRLEDGTGIIEVSFFGEVYQQVAPLLTRDEMLIVEGGLRIDDFSGGGF
QLRARGAMTLADACRRHARALRVKLNGIGPGFEQELKQTLAGYRGGRATVILHGYHNRSA
QADLELGEQWRVDAIPDLLRALRGLSWVEAAKLRIVKSEA
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
ttgatgtccgcacgcttcgtccacttccacctgcacagcgagtactcgctggtcgactcg
accatccgcatcaaggcgctggtcgatgcatgcgtgcgcgaaggcatgccggcggtggcg
ctcaccgacgacagcaacatgttcgcgctggtgaagttctacaaggcgtgcagcggtgcg
ggcatcaagccgatcggcggttgcgacctgtgggtcggctcgccggacgatccgcgcccg
tggcgactgaccctggtctgccagaaccgcgagggctatctcaacctgtcgcgcctggtg
tcgcgggcctggcgcgacggccagcacggcggcaaagcgctgatcgaggcgagctggctg
accccggacgccactgccgggctgatcgccctgctcgggcgcgagagcgaagtcggccgc
attgcggtgagccatggcgtggatccgggcgtcgcgcggctgcaacccctggcgcgactg
ttccccgaccgcctgtacctggagctgacccgctgcggccgcgaaggcgaggaagcctgg
aataccgccgcgctggcgctgggcgatgcgctcgagctgccgctgctggccagcaacgac
gtgcgcttcctcaagcaggacgacttcgaggcgcacgaggcgcgcgtatgcatcaaccag
gggcgcgtgctggccgacccgaagcgcccgcgcgactactccgaccagcaatacctgaag
tccccgacgcagatggcggaactcttcgccgatctgcccgaggcgctcgagaacacggtc
gagctcgccaggcgctgcaacctggaactgaagttcggcacgtattacctgcccgacttc
ccggtgccgcagggctacgatctcgacagctacatccgcgagaccgcgcgcgccggcctg
aaggagcgcctcgccgccaatccgctcgccgccggctacacgctggccgattacgaagcg
cgattggagcgcgagctcgacgtcatcatcgagatgggcttccccggctacttcctgatc
gtggccgacttcatcaactggggtaagcagaacgggattccggtcggcccgggccgcggc
tcgggcgccggttcgctggtcgcctgggtgctcaagatcaccgacctggacccgttgcag
ttcgacctgctgttcgagcgcttcttgaaccctgaacgcgtgtcgatgcccgacttcgac
atcgacttctgcatggatcggcgcgacgaggtgatcgactacgtcgcgcgcaagtacggc
cgcgagcacgtcagccagatcatcacctacggctcgatggcggccaaggcggtgctgcgc
gattcgggccgcgtgctgggcatgggctacaacgcggtcgacaagatcgccaagctgatc
ccgccgcgcccgctggacctgacgctgtccgatgcgctcggccgctcggagaagtccagg
aaggaacccgaccgcgtcgtcagggaattctgcgagctgtacgagcaggacgaagaagcg
cgcacgctggtcgacctcgcgctcaagctggagaacctcacccgcaacgtcggcaagcat
gccggcggcgtggtgatcggtccccggccgctcaccgaattcgcgccgatgtactgcgag
ccgggcggcggcggcatggtgacccagtacgacaaggacgacgtggaagccgtcggcctg
gtcaagttcgacttcctgggtctgcgcacgctcaccatcatcgactgggcagtcaaggca
atcaacgtgcgccgcgcccaagccggcgagccgccactggacatcagcgcattgccgctg
gacgacccggcgccgtacgagctgctcaagaaggcgcaaacggtcgcggtattccagctt
gaatcctccggcatgcagcgcatgctcaaggacgccaagcccgaccgcttcggcgacatc
gtggcgctggtggcgctgtaccgccccggcccgatggacctgattcccagcttcgtggcg
cgcaagcatggccgcgaggacgtggaatatcccgatccgcgcgtcgaaccgatcctgaaa
gagacctacggcatcatggtctaccaggagcaggtgatgcagatggcgcagatcgtcggc
ggctatacgctcggcggcgccgacctgctgcgccgcgcgatgggcaagaagaaagtcgag
gagatggtcaagcaccgcgcgaccttccgcgagggtgccgcgaaggacgggctgccgggc
gacaaggccgacgccatcttcgacctgatggagaagttcgccggctacggcttcaacaag
tcgcacgcggccgcttacgcgctggtctcctatcagaccgcgtggctgaaggcgcactac
ccggccgagttcatggccgcgaccatctcctcggacatggacaacaccgacaaggcggtg
acgttcctggacgagtcgcgcgcgatcggcctgaccatcctgccgccggacgtgaatgcc
tcggacttcatgttcgtcgccgtcgagccgaaggtgatccgctacggcctgggtgccatc
aagggcgtcggccagggcgcctgcgagtccatcgtcgaggagcggcggcgcggcggcccc
tacacggatcttgccgacttctgccggcgcgtcgattcggccaagctcaaccgccgcgtg
ctcgaagcgctgatcctgtccggcagcctggatgcgctcgcgcccaaccgcgccagcctg
atgctgcagctgcccgacgcgatcaaggccgccgagcagcacctgcgcgacaagcagtcc
ggccagaacgacatgttcggcgcgctgatgggcaccagcacgccggcagtgcagatcgag
ctgccgaccgcacccgagtggccgcttgagcagaagctgcagggcgagcgcgagacgctt
ggccactacctttccggccacccgaccgacccgtggcgcgaggagctggcccagctgtcc
acctgcccgctgggcgagatcgccgaccgctaccagccgccgcggccgcgcaagaacgac
ggcgaggaaaaccgtttccgccgcgggccggacacgccctggaccgtcgccggcatggtc
accgcggtacgcaagcgcggcgacagcgacgccttcgtgcggctcgaagacggcaccggc
atcatcgaggtgagcttcttcggcgaggtctaccagcaggtcgcgccattgctcacccgc
gacgagatgctcatcgtcgagggcggcctgcgcatcgatgacttctccggcggcggcttc
cagctgcgcgcccgcggcgccatgaccctggccgacgcctgccgccgccacgcccgggcg
ctcagggtcaagctcaacggcatcggccccggtttcgagcaggaactcaagcagacgctg
gccggctaccgtggcggtcgcgccacggtgatcctgcacggctaccacaaccgcagcgcc
caggccgacctggagctgggcgagcagtggcgcgtggacgccatccccgacctgctccgt
gcgctgcgcgggctgtcgtgggtggaagcggcgaagctccggatcgtcaagtccgaagcc
tga
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