Flavobacterium enshiense: LZF87_00125
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Entry
LZF87_00125 CDS
T08644
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
feh
Flavobacterium enshiense
Pathway
feh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
feh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LZF87_00125 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
feh03021
]
LZF87_00125 (rpoC)
03400 DNA repair and recombination proteins [BR:
feh03400
]
LZF87_00125 (rpoC)
Enzymes [BR:
feh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LZF87_00125 (rpoC)
Transcription machinery [BR:
feh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LZF87_00125 (rpoC)
DNA repair and recombination proteins [BR:
feh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LZF87_00125 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
UOK42565
LinkDB
All DBs
Position
complement(30815..35119)
Genome browser
AA seq
1434 aa
AA seq
DB search
MMNNRNKDKNTIKRFNKISIGLASPESILAESRGEVLKPETINYRTHKPERDGLFCERIF
GPVKDFECACGKYKRIRYKGIVCDRCGVEVTEKKVRRDRVGHINLVVPIAHIWYFRSLPN
KIGYILGLPSKKLDMIIYYERYVVIQPGIAKGPDGETLNKLDFLTEEEYLNIQDSLPMEN
QYLDDTDPNKFIAKMGAECIMDLLARTDLDALSYELRHAANNETSKQRKTEALKRLQVVE
SFREANNNRENRPEWMIMKVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKR
LMEIKAPEVILRNEKRMLQESVDSLFDNTRKASAVKTESNRPLKSLSDSLKGKQGRFRQN
LLGKRVDYSARSVIVVGPEMKLFECGLPKDMAAELYKPFVIRKLIERGIVKTVKSAKKII
DKKEPVVWDILENVIKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVCTAFNADF
DGDQMAVHLPLGPEAILEAQLLMLASHNILNPANGAPITVPSQDMVLGLYYMTKERLSTP
DHKILGEGLTFYSAEECNIALNEGRVELNARVKIRAKDFNEEGELVNKIIQTTAGRVLFN
EVVPEAAGYINEVLTKKSLRDIIGHILSATDVPTTAAFLDNMKDMGYKFAFKGGLSFSLG
DIRIPEQKQQLIADAREQVSGISMNYNMGLITNNERYNQVIDIWTSANAQLTELAMKNIR
EDQQGFNSVYMMLDSGARGSKEQIRQLTGMRGLMAKPKKSTAGGGEIIENPILSNFKEGL
SILEYFISTHGARKGLADTALKTADAGYLTRRLHDVSQDVIVNSVDCGTLRGVEVSALKK
NEEIVESLGERILGRVALQDVINPLSGEVLVHAGEEITEAIMKAIDASPVEKVDVRSPLT
CEAPKGICAKCYGRNLATGKMTQRGEAVGVIAAQSIGEPGTQLTLRTFHVGGVAGGISEE
SSIITRFAGRLEIEDLKTVKGEDNEGNSVDIVISRSTELKLVDEKTGILLNTHNIPYGSS
IFVKDGQTVDKGDVICKWDPYNGVIISEFTGKVAYEDIEQGQTFMVEIDEQTGFQEKVIT
EGRNKKLIPTLLIYGKDGELIRSYNLPVGAHLMVNDGEKIKAGKVLVKIPRRSSKAGDIT
GGLPRITELLEARNPSNPAVVSEIDGVVSFGKIKRGNREIIIESKFGEIKKYLVKLSSQI
LVQENDFVRAGVPLSDGAITPDDILRIKGPAAVQQYLVNEIQEVYRLQGVKINDKHFEVV
IRQMMRKVQIQDPGDTLFLEDQLVHTSDFIIENDKLYGMKVVEDAGDSENLKAGQIVSPR
DLRDENSLLRRNDRNLVVARDVVPATATPVLQGITRASLQTKSFISAASFQETTKVLNEA
AVAGKVDGLEGLKENVIVGHRIPAGTGMRDYDNIIVGSKEEFNELMAVKEEFNY
NT seq
4305 nt
NT seq
+upstream
nt +downstream
nt
atgatgaataatagaaataaagataagaatacgatcaaaagatttaacaagatttccatt
ggtttagcttctccggaatctatcctagcggagtcaagaggtgaggttttaaagccggaa
accatcaattatcgtacccataaaccagagcgtgacggtcttttctgtgagcgaattttc
ggtcctgtaaaagatttcgaatgtgcttgtggtaaatacaaaagaatccgttacaaaggg
atcgtgtgtgaccgatgtggggttgaagttactgagaaaaaagtacgtagagacagagta
ggtcatatcaatttggtggtgcctattgctcacatctggtatttccgttcacttcctaac
aaaattggttatatccttggtttgccgtctaaaaaattagacatgattatctactacgaa
agatatgtagtaatccagccaggtattgctaaaggtccagacggagaaactttaaacaaa
ttagatttcctaactgaagaagaatatttgaatattcaggattctcttccgatggaaaac
caatatttagatgataccgatccaaacaaattcatcgctaagatgggtgctgagtgtatc
atggatttattggctcgtaccgatttagatgctttgtcatatgaattacgtcacgcggct
aataatgaaacatctaaacaaagaaaaacagaagcgttaaaacgtcttcaggtagtggag
tctttccgtgaagcaaataataacagagagaaccgtccggagtggatgatcatgaaagtt
attcctgttatcccgcctgaattacgtccgttagtgccacttgatggtggtcgtttcgcg
acttcggatttgaacgacctttaccgtcgtgtaatcatccgtaacaatcgtttgaagcga
ttaatggaaatcaaagcgcctgaggtaatcttgagaaacgaaaaacgtatgttacaggaa
tctgtagactcgttgttcgataacacaagaaaagcttctgctgttaaaacagaatcaaac
agaccattgaaatcactttctgattcattgaaaggtaagcaaggtcgtttccgtcaaaac
ttattaggtaaacgtgtggattattctgcccgttcggttattgtcgttgggccggaaatg
aaattgtttgaatgtggtcttccaaaagatatggctgctgagctgtacaaaccattcgtt
attcgtaaattaatcgaaagaggaatcgttaagacagttaagtcggctaagaaaattatc
gacaaaaaagagccggtagtatgggatatccttgaaaacgtaattaaaggtcacccggta
ttgctaaaccgtgctcctacgttacaccgtttaggtatccaggcgttccagccaaaattg
atcgaaggaaaagcgattcagttacacccgttagtgtgtacggcattcaacgcggatttc
gatggtgaccagatggcagttcacttaccattaggacctgaggctattttagaggcgcaa
ttattaatgttggcttcgcacaatatccttaaccctgccaatggtgcgcctatcacggta
ccttctcaggacatggttcttggtctttactatatgaccaaagagcgtttgtctacaccg
gatcacaagattttaggtgaaggtttaactttctattctgcagaagagtgtaatatcgct
ttgaatgaaggaagagttgagttgaatgctcgcgttaaaatcagagcaaaagatttcaat
gaagaaggagaattggtaaacaaaattatccaaactactgccggtagagtattatttaat
gaagtagtacctgaagcggccggatatatcaatgaggtattgactaaaaaatcgttgcgt
gatattatcggacacattttaagtgctactgatgtacctacaactgctgccttcttggat
aacatgaaggatatgggatacaaattcgctttcaaaggtggtttgtcattctcattagga
gatatccgtattccggaacaaaaacaacaattgattgcagacgccagagaacaagtttcc
ggtatctcaatgaactataacatgggtcttattaccaataacgagcgttacaaccaggtt
attgatatttggacttctgcaaatgcgcagcttactgagttggcaatgaaaaacattaga
gaagaccagcaaggtttcaactcggtgtatatgatgcttgactctggggcgcgtggatcg
aaagagcagattcgccagttaactggtatgcgtggtttgatggctaagccgaaaaaatca
actgctggtggcggtgaaattattgaaaacccgatcttatcaaactttaaagaaggtctt
tccatccttgagtactttatctctactcacggtgcccgtaaaggtcttgcggatacggct
cttaaaacggcggatgctggttacttgactcgtcgtcttcatgatgtatctcaggatgtt
atcgtaaactctgtagattgcggtactttaagaggtgtggaagtttcggctttaaagaaa
aacgaagagattgtagagtctttaggtgaaagaatcttaggacgtgttgctttacaggat
gtaatcaatccgttgagtggcgaggtattggttcacgcaggtgaagaaattaccgaagct
attatgaaagcaatcgatgcttctccagttgaaaaagtagatgttcgttcgccgcttact
tgtgaggctccgaaaggaatctgtgctaaatgttacggacgtaacttggcaactggtaag
atgacgcagagaggtgaagcggttggtgttattgcagcacagtcaattggtgagcctggt
acacagttaacacttcgtacgttccacgtaggaggggttgcgggaggtatctctgaagag
tctagcatcatcactcgttttgcaggtagattggaaatcgaagatcttaaaacagttaaa
ggagaagataacgaaggaaactcagtggatatcgtaatttcccgttcaactgaattgaaa
ttggttgatgagaaaacaggaatcctattaaatacacataacattccttacggttcgagt
atctttgttaaagatggtcagacagtggataaaggagatgtaatctgtaaatgggaccct
tataatggtgtaatcatctctgaatttacaggaaaagttgcttacgaagatatcgaacaa
ggacaaacgttcatggttgaaatcgatgagcaaacaggattccaggaaaaagtaattaca
gagggtagaaataaaaaattaatccctactttattaatctacggaaaagacggtgaactt
attcgttcatacaacttaccggtaggagctcacttgatggttaacgacggtgagaagatt
aaagcaggtaaagtattagtgaaaatccctcgtcgttcttcgaaagcaggcgatatcacc
ggaggtcttccaagaattaccgagttgttagaggctcgtaatccttcaaaccctgcggtg
gtttctgaaattgatggtgtagtatcttttggaaaaatcaaaagaggtaaccgtgagatt
atcatcgaatctaaattcggtgagattaagaaatacttggtgaaattatcaagtcagatc
ttagttcaggagaatgacttcgtaagagcgggtgtgccattgtctgatggagcaatcact
ccggatgatatcttgagaattaaagggccagctgctgttcagcagtacttggttaacgag
attcaggaggtataccgtttacaaggggtaaaaattaatgacaagcactttgaggttgta
attcgtcagatgatgcgtaaagttcagattcaggatccgggagatactctattcttagaa
gatcaattggttcacacttctgactttattatcgaaaacgacaagttatatggaatgaaa
gtagtggaggatgcaggagattctgaaaacctgaaagcaggtcagattgtttctccaaga
gatttaagagacgaaaattcattgttaagacgtaatgatagaaatcttgtagtggcaaga
gacgtagttccggcaacggcaactccggttcttcagggtattacaagagcttcgttacaa
acaaaatcgttcatctctgcggcatcgttccaggaaacaaccaaagtattgaatgaagct
gctgttgcaggtaaagttgacggattagaaggattgaaagagaatgttatcgtgggtcac
agaatcccagccggtaccggtatgagagattacgacaacataatcgtaggttctaaagaa
gagttcaacgaacttatggcagtgaaagaagaatttaattactag
DBGET
integrated database retrieval system
