Flavobacterium enshiense: LZF87_04335
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Entry
LZF87_04335 CDS
T08644
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
feh
Flavobacterium enshiense
Pathway
feh03410
Base excision repair
feh03430
Mismatch repair
feh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
feh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LZF87_04335 (recJ)
03430 Mismatch repair
LZF87_04335 (recJ)
03440 Homologous recombination
LZF87_04335 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
feh03400
]
LZF87_04335 (recJ)
DNA repair and recombination proteins [BR:
feh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
LZF87_04335 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
LZF87_04335 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LZF87_04335 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
FAS_pseudo-KR
Motif
Other DBs
NCBI-ProteinID:
UOK43353
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Position
968663..970351
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AA seq
562 aa
AA seq
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MRWKLRSKPNQEKVQALQNALQVDEIIATLLVQRGIETFEQAKSFFRPTLADLHDPYLMK
DMDKAVERIERAIANEENILVFGDYDVDGTTAVSLMSSYLRSFYPNVATYIPDRYKEGYG
VSYQGIDFAEDNGFSIIIALDCGIKSIDHIAYAKAKNIDFVICDHHRPGDVLPDAVAVLD
PKRIDCSYPYDELCGCGVGFKLIQALAQNRNQTVEDLVPYLDLVATAIAADIVPITGENR
VLAKFGLDVINSNPRPGIKALIQNLKRSVLTITDVVFVIAPRINAAGRIKHGNYAVELLT
EFDLEQAEEFASQIESLNTDRKDLDKQITVEALQQIIDNEEQNRFTTVVYQEDWHKGVIG
IVASRLTETYYRPTLVFTKSGDKLAASARSVKDFDVYNALEACSEHLEQFGGHMYAAGMT
LKEENYEKFKDAFERVVSDTIHPDLLTPEISIDAEIGLSDINPKFMRILKQFEPFGPQNM
TPVFLAKGLQDTGYGKKIGSGEEHLKLYVKQNNTDSFGAIGFGLAAKKEISDNKNLFDAV
FSVEENEWNGTVSLQLRLRDIQ
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgcgttggaaattaagatctaagcccaatcaggaaaaagtacaagccttacaaaatgca
cttcaggtagatgaaattattgctaccttgcttgttcaacggggaatcgaaacttttgaa
caagcgaaatcttttttccgccccactttagcggatttacatgatccatacctcatgaag
gatatggacaaggcggtggaacgcatcgagcgtgccattgccaatgaagaaaatatactg
gttttcggggattatgatgtagacggaaccacagcggtttcccttatgtcctcttatctg
cgcagtttttatccgaatgtggcgacctatattccggatcgttacaaagaaggttacggt
gtgtcttaccaaggcatcgattttgccgaagacaacggattttctattattatcgcatta
gactgcggtattaaatccatcgatcatatagcttatgcaaaagcgaaaaatatagatttc
gtaatctgtgatcaccaccgtccgggagatgttttacccgatgctgttgctgttttggat
ccgaagcgaatcgattgttcatatccgtatgatgaattgtgtggctgtggagtagggttc
aagctgattcaggcattggctcaaaacagaaaccaaacggttgaggatttggttccttat
cttgatttggtggctactgccattgctgcggatattgttcctattacaggagaaaaccgt
gttttggcgaaattcgggttggatgtgattaattcgaatccgcgtccgggaatcaaagcg
ctgattcagaatttaaaacgaagcgtgcttacgataaccgatgtggtttttgtcattgcc
ccgcgtatcaatgccgcaggacgcatcaaacacggaaattatgctgtggaattactaacg
gaattcgatttggaacaagccgaagaatttgcatcccaaatagaatcgttaaacaccgac
cgcaaagatttagacaaacagatcacggtagaagcgcttcagcaaattatcgataatgag
gaacaaaatcgtttcaccactgttgtgtatcaggaagactggcacaaaggcgttatcggg
attgtggcttcgcgtttaacggaaacctattaccgaccgactcttgttttcaccaaaagc
ggagataaactggcggcttcggctcgttcagtgaaggattttgatgtgtacaatgcgctt
gaagcgtgctcagagcacctggagcaattcggcggacatatgtatgcagccggaatgacg
cttaaggaagagaattacgaaaaattcaaagatgcttttgaaagggtggtttcagacact
attcatcccgatttgttaacacccgaaatttcaatcgatgccgagatagggttgtcggat
atcaatcccaaattcatgcgtatcctaaagcaatttgagcctttcggaccacaaaacatg
acgccggtctttttagcgaaaggtttgcaagacaccggttatggaaagaaaataggctca
ggcgaagaacatctgaaattgtatgtcaaacaaaataatacggatagttttggcgctatc
ggcttcggtttggctgctaaaaaagaaataagcgacaataaaaacttgtttgatgccgta
ttttcggtagaagaaaatgaatggaacggtactgtttccttacaattacgacttcgcgat
attcaataa
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