Flavobacterium enshiense: LZF87_09615
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Entry
LZF87_09615 CDS
T08644
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
feh
Flavobacterium enshiense
Pathway
feh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
feh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LZF87_09615
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
feh03019
]
LZF87_09615
Enzymes [BR:
feh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LZF87_09615
Messenger RNA biogenesis [BR:
feh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LZF87_09615
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
ERCC3_RAD25_C
Cas3-like_C_2
UvrD_C
HP0268
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UOK41570
LinkDB
All DBs
Position
complement(2166299..2167567)
Genome browser
AA seq
422 aa
AA seq
DB search
MLFNELDLFKNIQHAINDEGYTNPTPIQEKSIPIILDGFDLVGCAQTGTGKTAAFAIPIL
NLLHRIVGSSSKVKHIRTLVVTPTRELAIQVGESFDTYGKYTNIRSLVIFGGVNQTSQVD
QLKKGVDVLVATPGRLLDLNKQGFINLDHLHHLVLDEADLMLDMGFINDVKKIIKLTPDN
RQTLLFSATMPIAIRELADSFLTKPEYVSVTPISSTAEKVNQKVYFVDKENKRNLLYQII
EGEKLESVLVFVRTKHGADNVVKALKKHHINAEAIHGDKSQSARQRVLESFKRNETTVLV
ATDIAARGIDIEMLPYVINFDLPNIPETYVHRIGRTGRAGNSGMAISFCSKDEKTYWQDI
EKLTRQKIKVVTDHPFQWTEQEKNPDAKPDFRNKKKPQDSNKKESSNSRKSEASKKKKKR
WY
NT seq
1269 nt
NT seq
+upstream
nt +downstream
nt
atgctttttaacgaactcgatttattcaaaaatatacagcacgccattaacgatgaagga
tataccaatcctactcccatccaggaaaaatccattccgattatccttgacggatttgat
ttggtaggatgtgcacagacaggaaccggaaaaacagcggctttcgccattccgattctg
aatcttttacaccgcattgtaggctcttccagcaaagtaaagcacattcgcaccttagta
gttactcctacgcgtgaattagccattcaggtaggcgaaagttttgatacctatggaaaa
tataccaacataagatcgctggtaatttttggtggtgtaaaccagacgtcacaagtagat
cagttaaaaaaaggtgttgatgtacttgtagccactccgggacgtttattggatttgaac
aaacagggatttatcaatttggatcacttgcaccatttggttttggatgaagctgatctg
atgctggatatgggattcatcaatgatgtaaagaaaattatcaaactaacgccggataat
cgtcagacgttattattttctgcgacaatgccgattgccatccgtgaattagccgacagt
tttttaacaaaacctgaatatgtttccgttacccccatttccagtacagccgaaaaagta
aatcagaaagtttattttgttgataaagaaaataaaagaaaccttctttaccaaattatt
gaaggggagaaactggaaagcgtattggtttttgtgcgtacgaaacacggcgctgacaat
gtggtaaaggcactaaagaaacaccatattaacgcagaggctattcacggagataaatca
caaagtgcaagacaacgagtactggaaagctttaaaagaaacgaaactaccgttttagta
gctactgatattgctgccagaggtatcgatattgaaatgttgccatatgtaattaatttc
gatttaccgaatatccccgaaacctacgtacacagaattgggcgtactggtcgtgccggt
aattcgggtatggccatttcattttgttccaaagacgaaaaaacctattggcaggatata
gaaaaactaactcgtcaaaaaataaaagtagttaccgaccatcctttccaatggaccgaa
caggaaaagaatccggatgctaaacctgatttcagaaataaaaagaaaccgcaggactcg
aataaaaaagaaagttctaattcgcgaaaatcagaagcgtccaagaaaaagaaaaaacgc
tggtattag
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