Flavobacterium enshiense: LZF87_11550
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Entry
LZF87_11550 CDS
T08644
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
feh
Flavobacterium enshiense
Brite
KEGG Orthology (KO) [BR:
feh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
feh03009
]
LZF87_11550 (rlmD)
Enzymes [BR:
feh01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
LZF87_11550 (rlmD)
Ribosome biogenesis [BR:
feh03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
LZF87_11550 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
MTS
Cons_hypoth95
TRAM
TRM5-TYW2_MTfase
Methyltransf_11
Methyltransf_15
PrmA
PCMT
N6_N4_Mtase
FtsJ
UPF0020
NagA_C
Methyltransf_12
BRAP2
Motif
Other DBs
NCBI-ProteinID:
UOK41937
LinkDB
All DBs
Position
2573069..2574484
Genome browser
AA seq
471 aa
AA seq
DB search
MGRKKTDKIVFENVKVLDAGAKGVSVAKAPEGQVIFIPNVVPGDVVDVQTFKKRKSYFEG
KAIKFHEYSEHRTTPVCEHFGVCGGCKWQNMKYEQQLFYKNQEVYNHLKRIGKIELPEFE
PILGSKEQFFYRNKMEFGFSSSRWMTQEEVDSGAELDNKNAVGFHIPKMWDKILDINKCH
LQQDPSNDIRNEIRRFANENDLSFFNPRNHEGLLRTLMIRTSSTGEIMVLIQFFEDDKAK
RELLLNFLAERFPEITSLQYVINQKANDTIYDQDVILFKGREYILEEMEGLNFSINAKSF
YQTNSAQAYELYSITREFAGLTGEELVYDLYTGTGTIAQFVSKKAKKVIGVEAVPEAIAD
AKENAKRNNITNCEFFVGDMKHIFNDDFIRTHGHPDVIITDPPRDGMHADVVKQILSIAP
EKVVYVSCNSATQARDLALMDEMYKVTRVRPVDMFPQTHHVENVVLLEKRS
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atgggaagaaaaaaaacagacaaaatcgtattcgaaaacgtaaaagtccttgatgcaggt
gcaaaaggcgtatcggtggcaaaagccccagaaggtcaggttatatttatacctaatgtt
gttcctggcgacgtagttgacgttcagacatttaaaaaacgtaaatcctattttgaagga
aaagcgataaaattccacgaatattcagaacacagaacaacaccagtttgcgaacatttt
ggagtttgcggtggctgtaagtggcaaaacatgaaatacgaacagcaattgttctataaa
aatcaggaagtttataatcatttaaaaagaatcggaaaaattgaattaccggaatttgag
cctattttagggtcgaaagaacagtttttctacagaaataaaatggaattcggattctca
agttcacgctggatgactcaggaagaagtggacagcggagcagaacttgacaataaaaat
gcagtaggtttccatatcccaaaaatgtgggacaaaattttggatatcaacaaatgtcat
ttacagcaagatccttcgaacgatattcgtaacgaaatccgaagatttgccaatgagaac
gatttgtcttttttcaatccgagaaatcacgaaggcttattaagaactttgatgattcgt
acttcttctaccggagaaatcatggtattgattcagttttttgaagatgataaagcaaag
cgcgaactattattgaatttccttgccgagcgttttccggaaataacttctttacaatac
gttatcaaccaaaaagcaaacgatactatatacgatcaggacgtcatccttttcaaagga
agagaatatatccttgaagaaatggaaggactgaatttcagtatcaatgcaaagtctttt
tatcagacaaattcggcacaagcatacgaactgtattctatcacaagagaatttgctgga
ttaacaggagaagaacttgtttacgatttatataccggtacaggaaccattgcgcaattc
gtttcaaaaaaagcgaaaaaagtgattggtgtggaagctgttcccgaagcgattgctgat
gctaaagaaaacgcaaaacgcaacaacattaccaattgtgaattctttgtgggtgatatg
aaacatatattcaatgacgatttcatcagaacacatggacacccggatgtaattatcact
gacccgcctcgtgacggtatgcacgccgatgtagtgaaacagattttaagcatcgcccct
gaaaaagtggtttatgtaagttgtaattcggctacgcaagcccgtgatttggctttgatg
gacgaaatgtacaaagtaaccagagtgcgtcctgtagacatgttcccgcaaacgcatcac
gtggaaaacgttgtacttttagaaaaaagaagttag
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