Flavobacterium enshiense: LZF87_14485
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Entry
LZF87_14485 CDS
T08644
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
feh
Flavobacterium enshiense
Pathway
feh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
feh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LZF87_14485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
feh03019
]
LZF87_14485
03400 DNA repair and recombination proteins [BR:
feh03400
]
LZF87_14485
Enzymes [BR:
feh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LZF87_14485
Messenger RNA biogenesis [BR:
feh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LZF87_14485
DNA repair and recombination proteins [BR:
feh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LZF87_14485
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
NirdL-like_HTH
LRR_NXF1-5
TFIIE_beta
DUF2582
Motif
Other DBs
NCBI-ProteinID:
UOK42502
LinkDB
All DBs
Position
3185591..3187480
Genome browser
AA seq
629 aa
AA seq
DB search
MDAQQILKKYWNHDSFREPQEAIIQSVLEGKDAFALLPTGGGKSICFQVPAMIKPGICLV
ISPLIALMKDQVQNLQKRNIKAIALTGGISSDETIDLLDNCQFGNYKFLYLSPERLQSDW
VLERIKGLPINLIAIDEAHCVSQWGHDFRPAYLKISKLKEYFPKVPFLALTASATQRVQD
DICTQLGLTNPAVFKKSFARENIAYMVFEAEDKLFRIQQILTKNPEPSIIYVRNRKACHD
VSAQVAAMGFKSTFYHGGLTQKEKGKNMQSWLMEDVQVMVATNAFGMGIDKPNVRTVIHI
QLPENLENYYQEAGRAGRNGVKAFAVLLLAPSDIQTTESQFLSVLPDKTFLKEVYIKLNN
YFQIGYGEGINETFSFNLNHFCQRYKFPVLKTFNAMQFLDNQGIISLSKEFSEKITIRFS
LESREIIRYISMNPSDEPVITAILRNYSGVYEIDTAINTNLIARKSGTSEENVIEVLKRM
HQKEICILHSQSNDSQLTFNEVREDERTINRIAKFLQQQNEIKIKQFESVIRYVSDKKQC
KSRLLLEYFGETDTKECGICSFCITQKKTEKSPLEIAKNVLALLKNSPLSSREIENSLEL
STEETIFALQLLLENNKVKINNQNQYISL
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
ttggacgcacagcaaattctaaaaaaatactggaaccacgattcgttccgtgagccgcag
gaagcaattatccaatcggttctggaaggaaaagacgcttttgcactgctcccaaccggc
ggcggaaaatcgatttgttttcaggtaccggccatgataaaaccgggaatctgcctggtt
atttccccgttgatcgccttaatgaaagaccaggtccagaatctgcaaaaacgaaacata
aaagcaatcgctttaacaggtggaatttcttcagacgaaaccatcgatttgcttgataat
tgtcagttcggaaactataaattcctttatctttccccggaacgactgcaatctgactgg
gttttggagcgtataaaaggccttccgataaatcttatcgccattgacgaagcacattgt
gtctcgcaatggggccatgatttccgacctgcctatttaaaaatttcaaaactaaaagag
tatttcccgaaagttccttttttggctttaacagcttcagccacacaaagagttcaggac
gacatctgcacacagctaggattaacaaacccggcggtattcaaaaaatcatttgcaaga
gaaaatattgcttacatggtttttgaagccgaagacaagcttttcagaatccagcagatt
ctcactaaaaacccggaaccttcaataatttatgtccgcaaccgaaaagcctgccatgac
gtatcggcacaagtggctgcaatgggattcaaaagcacattttatcacggcggacttaca
cagaaagaaaaaggaaaaaacatgcagtcatggctcatggaagatgttcaggtaatggtt
gccacaaacgcctttggcatgggaatcgacaaacccaatgtccgcacggtaatccatatc
caacttcccgaaaaccttgagaattactatcaggaagcaggccgcgccggacgaaacgga
gtaaaagcctttgccgttttacttcttgccccgtcggatatccaaactacagaaagccag
tttctttccgtattgcccgataaaacctttttaaaagaagtttacatcaaactcaataat
tattttcagataggatacggcgaaggtattaacgaaactttctcgtttaatctgaaccat
ttttgccagcggtacaaattccctgttctgaaaaccttcaatgcgatgcagtttctggac
aatcaaggaatcatttcactttccaaagaattttcagaaaaaatcaccatccgtttctca
ttagaaagccgtgaaatcatacgttatataagtatgaatccgtccgacgagccagtaatt
acagctatattacgtaattatagcggagtatacgaaatagacacagccatcaacaccaat
ctgattgcacgaaaatcaggcacttccgaagaaaatgtgatcgaagtgttgaaacgaatg
catcagaaggaaatctgtatattacacagtcagtctaacgacagtcaactcaccttcaac
gaagtacgcgaagacgagcgaaccataaaccgaattgcgaaattcctgcaacagcagaac
gaaattaaaataaagcaatttgaatcggttatccgatatgtatcggacaagaaacaatgc
aaaagcagattactcctggagtattttggagaaacagacactaaagaatgtggcatctgc
tcattttgcatcactcagaaaaaaacagaaaagagtcctcttgaaattgcaaaaaacgta
ttggccctgcttaaaaactcgcctttatcctcaagagaaatcgaaaattcactggaatta
agcacagaggaaactatctttgcacttcagcttttgttggaaaacaacaaagtaaaaatc
aataatcaaaaccaatacattagtctataa
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