Ferruginibacter albus: K9M53_08115
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Entry
K9M53_08115 CDS
T07524
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
fei
Ferruginibacter albus
Pathway
fei03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fei00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K9M53_08115 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fei03019
]
K9M53_08115 (rnr)
03016 Transfer RNA biogenesis [BR:
fei03016
]
K9M53_08115 (rnr)
Enzymes [BR:
fei01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
K9M53_08115 (rnr)
Messenger RNA biogenesis [BR:
fei03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
K9M53_08115 (rnr)
Transfer RNA biogenesis [BR:
fei03016
]
Prokaryotic type
tRNA degradation factors
K9M53_08115 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
OB_HELZ2
S1
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
UAY53620
LinkDB
All DBs
Position
1814938..1816932
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AA seq
664 aa
AA seq
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MSKKTKKKDKKSSSQVLIVKGVLDISRSGMGFVVVEGMEKDILVRPHDFNRAFDGDTVRV
QIATGGKIGKRVEGKITEVVERRKSEFVGNIQGSKNFAFFIPDATKPVPDFYISADHLNG
AVDKDRVVVRLLKWDKDNKKPEGVVMSVIKAEDRSDLAMKEILIEAGFPLAFNDEVLNEA
NKLSETITPEELKRRKDFREVLTFTIDPFDAKDFDDAISVRKTNDEVYEIGVHIADVSHF
VTPGSILDETAYERATSVYLPDRVNPMLPEKISNELCSLRPNEDKYTFSAVFQINQKAEI
KHTWIGRTVIHSDRRFTYEEVQDIIEKREGDHSKIILMMNQLAQKFRKDRFANGAINFSS
QEVKFKLDEKGKPIGIVIKESKEAHQLIEEFMLLANRAVAEYVSKIKVNKKEIPFPYRIH
DTPDQEKLLPFVAFAKKFGYKFDMNDEEAVARSFNNMLKEVNGKPEQHVLEQLGIRTMAK
AIYTSENIGHYGLGFEHYCHFTSPIRRYPDVMVHRILQECLDKQVKIDKKMEEKCKHCSD
MERKAMECERAGNKYKQVEFMQNFVGDEFDGIISGVAAFGFWVETIEHKCEGLVSTRDLM
DYDDFRHDTADYSLVGMRTRQKFRMGDKIKIKVVAANLEKRQLDYHWVPPNEEKAKGKKA
KTNK
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
gtgagtaaaaagaccaaaaagaaagataagaaatcatcatcgcaggtgctgatagtaaaa
ggtgtgttggatatttcacgcagcggaatgggttttgtagtggtggaaggaatggaaaaa
gatattttagttcgtccgcatgactttaacagggcgtttgacggagataccgttagggtg
cagatagcaaccggcggtaagatcggcaagagggtggaaggtaagataacagaagtggta
gaaagaagaaagtctgaatttgtcggcaatatacagggaagtaaaaattttgcatttttt
attccagatgctactaagccggttcctgatttttatataagtgcagaccatctgaatggt
gctgttgataaagacagggtggtagtgcgtttattaaaatgggataaagacaataaaaaa
ccggaaggcgtagtaatgtcggtgatcaaggcggaagacaggtctgacctggcgatgaaa
gaaatattaattgaagcgggatttcctttagcatttaatgatgaggtgttgaatgaagcc
aataaattatcagaaacgatcaccccggaagagcttaagcgtcgtaaagattttagagaa
gtgttgacatttacgatcgatccgtttgatgcaaaagattttgatgatgctatttctgta
cgtaaaacaaatgatgaagtatatgaaataggagtgcacattgcagacgttagtcatttt
gtaacaccgggaagcattttagatgaaaccgcttatgaacgggctacgagcgtgtattta
ccggatagagtaaatcccatgctgccggaaaagatttctaatgagttatgttccttacgg
cctaacgaagataaatatactttctctgcagtgttccagatcaatcaaaaagcagaaata
aagcatacatggatcgggagaaccgtgattcatagcgatcgtcggtttacttatgaagaa
gtacaggatatcattgaaaagcgggaaggtgatcatagtaagatcattttaatgatgaac
cagttggcacagaaattcagaaaagatcgttttgccaatggcgctattaatttttcttcg
caggaagtaaaatttaagctggatgaaaaaggcaaaccaattggtattgttattaaagaa
agtaaagaagctcatcaactgatagaagagttcatgttgttagcgaatcgtgctgtcgca
gaatatgtttcaaaaattaaagtgaacaaaaaagaaattccttttccatatcgaattcac
gatacacctgatcaagaaaaactactgccttttgttgcgtttgcaaaaaagttcgggtat
aagtttgatatgaatgatgaagaagcagtagctcgttcttttaataacatgttgaaggaa
gttaacggaaaaccagaacagcatgtattggagcaattaggtattcgtacaatggctaaa
gcaatttatacatcggaaaatatcggtcactatggtttaggatttgaacattattgtcat
tttacatcacctatccgtcgctatcccgatgtaatggtacatcgcattctacaggaatgt
ttggataagcaggtgaagatcgataaaaagatggaagaaaaatgtaagcattgcagcgat
atggagcgcaaggcaatggagtgcgaacgtgccggtaataaatacaagcaggtagagttt
atgcagaattttgtaggagatgaatttgacgggatcatcagtggtgtagcggcttttggt
ttttgggttgaaactatcgagcataaatgtgaaggtttggtgagtacgagagacctgatg
gattatgatgacttcaggcacgatacggcagattattcattggtaggaatgcgcacccgt
caaaaattcaggatgggagataagataaaaataaaagtagtagcagccaaccttgaaaag
cgacaactcgattatcattgggtaccaccaaatgaagaaaaagcaaaaggcaaaaaagca
aagactaataaatag
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