Flavivirga eckloniae: C1H87_05245
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Entry
C1H87_05245 CDS
T05284
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
fek
Flavivirga eckloniae
Pathway
fek03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fek00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C1H87_05245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fek03019
]
C1H87_05245
03400 DNA repair and recombination proteins [BR:
fek03400
]
C1H87_05245
Enzymes [BR:
fek01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C1H87_05245
Messenger RNA biogenesis [BR:
fek03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C1H87_05245
DNA repair and recombination proteins [BR:
fek03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
C1H87_05245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RecQ-1-like_HTH
RQC
Helicase_C
HRDC
RecQ_Zn_bind
HTH_40
ResIII
Peptidase_C36
TniB
Motif
Other DBs
NCBI-ProteinID:
AUP78153
UniProt:
A0A2K9PM62
LinkDB
All DBs
Position
complement(1283112..1285316)
Genome browser
AA seq
734 aa
AA seq
DB search
MLVAKSDLHSALKRNFGFNKFKGLQEDVVESILSGNHTFVIMPTGGGKSLCYQLPALMQD
GTAIVVSPLIALMKNQVDAIRGVSNEEGIAHVLNSSLNKTEVKRVKEDIINGVTKLLYVA
PESLTKEENVEFLRSVKVSFMAIDEAHCISEWGHDFRPEYRNLRHIISRIGDNIPIIGLT
ATATPKVQEDIIKNLGINNAKTFKASFNRPNLYYEVRPKTKNVDADIIRFIKQNEGKSGI
VYCLSRKRVEELAQVLQVNGIKAVPYHAGLDAKSRSSYQDKFLMEDVDVVVATIAFGMGI
DKPDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAYYAYKDIEKLEKFMSGKPVAEQ
EIGHALLQEVIAFAETSISRRKFILHYFGEEFDNATGEGGDMDDNVRFPKKKREAKEDAA
ILLETIGLTNEKYKSKDLVNVIVGKENALINSHKTNEQPFFGKGKGKDNKYWMALLRQLL
VAGYLRKDIETYGVIKLSDAGKSYIKNPVSFMMTEDHIYEGEQEDGTVITATKGGGAVAD
EVLMGMLKDLRKKNAKKLGVPPFVIFQDPSLEDMALKYPINLAELANVHGVGEGKAKKYG
KDFVALISTYVEENDIVRPDDLVVKSTGTNSANKLYIIQNIDRKLPLDDIASSKGMSMED
FIKEMEAIVYSGTKLNISYWIDDILDEDQQEEIHDYFMESESDKIDDAIEEFDGDYDHEE
LRLYRIKFISEVAN
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atgttagtagcaaaaagtgacttgcactctgcgcttaaaagaaactttggtttcaataag
tttaagggtttgcaagaagatgtcgtagaaagtattttatcaggaaatcatacgtttgta
ataatgccaactggaggagggaaatcattatgttaccagttgccagcattaatgcaagat
ggaacagctattgtggtatcgccattaatagctctaatgaaaaaccaagttgacgcgata
agaggtgtgtctaacgaagagggcatagcacacgttttaaattcttctttaaataaaacc
gaggttaaacgtgttaaggaagatattataaacggtgtaactaaactattatatgttgct
ccggaatctttaactaaagaggaaaacgttgagtttttgcgatctgtaaaggtgtctttt
atggccatcgacgaggctcactgtattagtgaatgggggcacgattttagaccggagtat
agaaatttgcgtcatattattagtagaataggcgataatattccaattataggtctaact
gccaccgcaacaccaaaggttcaggaagatattataaagaatttaggtataaataatgcc
aagactttcaaagcatcttttaatagacctaatttatattatgaggttagaccaaagaca
aaaaatgtagatgcagatattattcgttttataaaacaaaacgaaggcaagtcgggtatt
gtgtattgcttaagtagaaaacgagttgaagagctcgctcaggtattacaagtaaatggt
ataaaggcagtaccataccatgcaggactagatgcaaaatcgagatccagctaccaagat
aaattcttaatggaagatgtagatgtagtggtagccacaattgcttttggtatggggata
gacaagcccgatgtgcgttttgtaatccatcatgatattccaaaaagtatagaaagttat
tatcaggaaactggtagagcaggacgtgatggaggcgaaggccattgtttggcgtactat
gcttataaggacattgagaaattagaaaaattcatgtctggtaaacctgtagcagaacaa
gaaattggacatgcattattacaggaagtgattgcttttgcagaaacatctatttccaga
agaaaatttattttacattattttggagaagagtttgataatgcaaccggcgaaggtggc
gacatggacgataatgttagattcccaaaaaagaagcgtgaagctaaagaagatgccgca
atattattggaaaccataggactaactaacgaaaagtataagtctaaagatttagtaaat
gttatagttggtaaagaaaatgctttaatcaactcccataaaaccaatgaacagccattt
tttggaaaaggtaaaggcaaggacaataaatactggatggctttgttaagacagttattg
gttgctggttatcttagaaaagatattgaaacgtatggtgttattaaactaagtgatgct
ggtaaatcttatataaaaaatcctgtgtcgtttatgatgacggaagaccatatatatgaa
ggagagcaagaagatggtacagttattacagcaacaaaaggaggtggagcagtagcagac
gaagtgttaatggggatgcttaaggatttgcgtaaaaagaatgcaaagaaattaggagta
cctccatttgttatatttcaagacccttcgctagaagatatggccttaaaatatccaatt
aacttggctgagttagcaaatgttcatggtgtaggagaaggtaaagctaaaaaatatgga
aaagatttcgtagcattaatttctacttatgttgaagaaaatgatattgttcgtccagac
gatttagttgtaaaatcaactggaaccaattcggccaataaattgtatatcattcaaaat
atagacagaaaattgcctttagacgatatagcatcctcaaaaggaatgtctatggaagat
ttcattaaagaaatggaagctattgtctattctggtactaaattgaatattagttattgg
attgatgatattctggatgaagatcagcaagaagaaattcatgattattttatggaatct
gaatctgataaaattgatgatgcgattgaagagtttgatggcgattatgatcatgaagaa
ctgcgtttgtatcgtattaagtttattagcgaagtggctaattag
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