Flavivirga eckloniae: C1H87_17310
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Entry
C1H87_17310 CDS
T05284
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
fek
Flavivirga eckloniae
Pathway
fek03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fek00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
C1H87_17310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fek03021
]
C1H87_17310
03400 DNA repair and recombination proteins [BR:
fek03400
]
C1H87_17310
Enzymes [BR:
fek01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
C1H87_17310
Transcription machinery [BR:
fek03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
C1H87_17310
DNA repair and recombination proteins [BR:
fek03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
C1H87_17310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
HHH_XRCC3_RpoA
RNA_pol_L_2
Motif
Other DBs
NCBI-ProteinID:
AUP81669
UniProt:
A0A2K9PX84
LinkDB
All DBs
Position
4168662..4169654
Genome browser
AA seq
330 aa
AA seq
DB search
MAVFNFQKPDKVIMIDSTDFEGKFEFRPLEPGYGLTVGNALRRVLLSSLEGFAITSVRIE
GVDHEFSAIAGVVEDVTEIILNLKQVRFKRQIDDIDNESISISISGQDRITAGDFQKFIS
GFQVLNTELVICNLDPKVNFNLEITIEKGRGYVPAEENKKAAAPIGTIFTDSIYTPIKNV
KYSIENYRVEQKTDYEKLVFEIITDGSITPQDALTEAAKTLIHHFMLFSDERITLEADEI
AQTETYDEESLHMRQLLKTKLIDMDLSVRALNCLKAAEVDTLGDLVSFNKNDLMKFRNFG
KKSLTELEELVNVKGLNFGMDLSKYKLDKD
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
atggcagtatttaattttcagaagcccgacaaagtaatcatgattgattcaacagatttt
gaaggcaaattcgaatttcgccctttagaacctggttatggattaacagtaggaaacgct
ctaagaagagttttactttcttctttagaaggatttgcaatcacatcagttagaattgaa
ggtgtagatcatgagttttctgcaattgctggggtagttgaagatgttacagaaatcatt
ttgaatttaaaacaagtacgttttaaaagacaaattgatgatattgataatgaatcaatc
tcgatttcaatttctggtcaagacagaattacagctggggattttcaaaaattcatttca
ggattccaagtattaaatacagaattagttatctgtaacttagatcctaaggttaatttt
aatttggaaattactattgaaaaaggtagaggttatgttcctgcagaagaaaataagaaa
gctgctgcaccaataggaacgatctttacagattcaatatacacaccaataaagaatgtt
aagtatagtattgagaactatcgtgtagagcaaaaaaccgattacgaaaaattagttttt
gagattattacagatggttcaattacaccacaagatgccttaacagaagcagctaaaacg
ttaattcaccacttcatgttattctctgatgagcgtatcactttagaagctgatgaaatt
gcacaaactgaaacatacgatgaggaatcattacatatgagacagttgcttaaaactaag
ttaatcgatatggatttatctgtacgtgcgcttaactgtttaaaagctgcagaagttgat
actttaggagatttagtatcattcaacaaaaacgatttaatgaaattcagaaacttcggt
aagaagtctttaacagaactagaagaactagtaaacgttaaaggattaaatttcggaatg
gatttaagcaaatataaattagataaagactaa
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