Flavivirga eckloniae: C1H87_19955
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Entry
C1H87_19955 CDS
T05284
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
fek
Flavivirga eckloniae
Pathway
fek03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fek00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C1H87_19955
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fek03019
]
C1H87_19955
03009 Ribosome biogenesis [BR:
fek03009
]
C1H87_19955
Enzymes [BR:
fek01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C1H87_19955
Messenger RNA biogenesis [BR:
fek03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C1H87_19955
Ribosome biogenesis [BR:
fek03009
]
Prokaryotic type
rRNA helicases
C1H87_19955
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
FliG_M
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AUP80859
UniProt:
A0A2K9PUY0
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All DBs
Position
complement(4864533..4866335)
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AA seq
600 aa
AA seq
DB search
MSTFQDLGLNDDLLQAITDLGFVKPSEVQDKAIPILLNSEGDLVALAQTGTGKTAAFGFP
MLQKIDINSQTTQGLILSPTRELCLQIANEMSQYGKYCKGLNVVAIYGGSSITDQARSVK
RGAQIIVATPGRMKDMISRRMVDISKIQYAVLDEADEMLNMGFKEDITDILSHTPEDKST
WLFSATMPREVAAIAKNFMHNPQEITVGNKNESTTNVSHEYFLVNARDRYQALKRLSDAN
PDIFSVVFCRTKRDTQKVAEQLIEDGYSAGALHGDLSQNQRDLVMKSFRNKQIQMLVATD
VAARGIDVDDITHVINYQLPDEIETYTHRSGRTGRAGKTGVSMVIVSKSEVRKIKSIERI
IKRKFEKKDIPDGSEICQVQLMSLANKIHNTEINHEIDRHLSSINELFEDTDKDELIKKF
FSVEFTRFYNYYQKSRNLNVSESSSDSKDSGRDFGGKSTRYFINVGGKDGYDWMKLKDFL
KEQLQLGRDDVFKVEVKDSFSFFNTENELKDKVLEFFTDFKHNGRFVNVEVSENRGGGRR
RNDRNRGSKRRDDRKGGGKRDGRRSDSGNRGDRRRSDSSSKPRRSDSGNSNSFSPRRSRR
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atgagcacattccaagatttaggtcttaatgacgacctattacaagctattacggactta
ggtttcgtaaaacccagtgaagtacaagacaaagctattccaattttattaaattcagaa
ggcgatttagtagccttagcgcaaaccggaaccggtaaaacggcagctttcggtttccct
atgctacaaaaaattgatatcaatagccaaacaacccaaggtttaattttatcgcctact
cgcgagctttgcttgcaaatagccaacgaaatgagccaatatggcaagtactgtaaaggt
cttaacgtcgtagccatttatggcggatccagcattacagatcaagccagatctgttaaa
agaggagcacaaattattgtagccacgcctggtcgtatgaaagatatgattagcagacgt
atggttgatatttctaaaattcaatatgctgttttagatgaagccgacgaaatgctaaac
atgggctttaaagaagatataacagatatactttcgcatacaccagaagataaaagtacg
tggttgttttctgcaaccatgccaagagaagttgcggctattgccaaaaactttatgcac
aacccacaggaaataactgttggaaacaaaaacgaaagtactacaaatgtatcccacgaa
tactttttagtaaatgccagagatcgttaccaggctttaaaacgcttgtctgatgccaat
ccggatattttctcggtagtcttttgcaggaccaaacgcgatactcaaaaagtagccgaa
caacttattgaagatggatatagtgctggtgccttacatggtgatttaagtcagaatcaa
cgtgatttggtcatgaaatcgtttagaaacaaacaaatacaaatgttagtagctaccgat
gttgctgcacgtggtattgatgttgatgatataactcacgtaataaactaccaattacca
gacgaaatcgaaacttacacacaccgttcgggacgtacggggcgtgctggaaaaacaggg
gtttctatggtgattgtttctaaaagcgaagtacgtaaaataaaaagtattgagcgtatt
attaaacgtaagttcgagaaaaaagatattccggacggatcggaaatttgtcaggtacaa
ttaatgtcgcttgccaataaaatacataatacagagatcaatcatgaaattgatagacat
ttatcaagcatcaacgaattgtttgaggataccgataaagatgaattgatcaagaagttt
ttctctgttgaatttacgcgtttctacaattattatcaaaaatccagaaacttaaatgtt
tctgaaagctctagcgatagtaaggatagcggacgtgattttggtggtaaatctacacgt
tactttataaatgttggtggcaaagatggttatgattggatgaaactaaaagacttccta
aaagaacagttgcaacttggtagagacgacgtttttaaagttgaagtaaaagatagtttc
tctttctttaataccgaaaatgaattaaaagataaagtactggaattctttaccgacttt
aaacataatggacgttttgttaacgttgaagtttctgaaaatcgaggaggaggcagaagg
cgtaacgacagaaaccgaggcagtaaaagacgtgatgacagaaaaggaggcggaaaacgt
gatggaagaagatctgattctggaaatagaggtgacagacgtcgttccgacagctcttcg
aaaccaagacgttcagactctggcaattctaattcatttagccctagacgttctagacgt
tag
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