Flavivirga eckloniae: C1H87_20080
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Entry
C1H87_20080 CDS
T05284
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
fek
Flavivirga eckloniae
Pathway
fek03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fek00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C1H87_20080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fek03021
]
C1H87_20080
03019 Messenger RNA biogenesis [BR:
fek03019
]
C1H87_20080
Transcription machinery [BR:
fek03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
C1H87_20080
Messenger RNA biogenesis [BR:
fek03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
C1H87_20080
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
NACHT
AAA_25
AAA
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AUP80880
UniProt:
A0A2K9PUY8
LinkDB
All DBs
Position
complement(4892519..4894198)
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AA seq
559 aa
AA seq
DB search
MFEISQLKEKKLSDLQEIAKKLNVPKYRSLKKLDLVYQILDQQAADPKAVKAAVSPTEET
TEKKTENKPARKPRQRVQKPTKNTPAKNTPKQNEAKASTEQKAEIPEKANTPKPDTPTKQ
NKEEQKQDNNQKQDNNQKPKNQNDNQQKSHQRRDNQQKNQHRNQNQKNGNVETGNKDGRN
RYREPDFEFDAIIESEGVLDIMQDGYGFLRSSDYNYLSSPDDIYVSQSQIRLFGLKTGDT
VLGHVRPPKEGEKYFPLIKVSKINGQNPNVVRDRVSFEHLTPLFPQQKFDIAEKQSTIST
RIMDLFSPIGKGQRGMIVSQPKTGKTMLLKDVANAIAANHPEVYQMILLIDERPEEVTDM
QRNVRGEVIASTFDKEAHEHVKIANIVLEKAKRLVECGHDVVILLDSITRLARAYNTVQP
ASGKILSGGVDANALHKPKRFFGAARNIENGGSLTIIATALTETGSKMDEVIFEEFKGTG
NMELQLDRKISNRRIFPAIDLTSSSTRRDDILLDENTIQRMWVMRKYLADMNPVEAMEFI
NERFKQTRNNEEFLISMNG
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgtttgaaatttcgcaattaaaagaaaagaagctctctgacttacaagagatcgccaaa
aaattgaacgttcccaaataccgttcattaaaaaaattagatttagtttatcagatacta
gatcaacaagctgccgatccaaaggcagtaaaagctgctgtttcgcccaccgaagaaact
acggaaaagaaaacagaaaataaaccagcgagaaaaccaagacagcgtgttcaaaaacct
actaaaaacacgccagcaaaaaacacacctaaacagaacgaagcaaaagcttcgacagaa
caaaaagctgaaatcccggaaaaggctaatactcctaaacctgatactcctactaaacaa
aataaggaagagcaaaaacaggacaataaccagaaacaggataataaccaaaaaccaaaa
aaccaaaacgataaccagcaaaaatctcatcaaagacgagataatcaacaaaaaaaccaa
catcgtaaccaaaaccaaaaaaatggtaatgttgagactggaaacaaagatggaagaaac
cgttacagagaacctgatttcgaatttgatgccattatagaaagtgaaggcgttttagat
atcatgcaagatggttatggttttttacgttcttctgattataactatctgtcatcacca
gatgatatttatgtttctcaatcacaaattagattgtttggtttaaaaacaggagatacc
gttcttggtcatgtaagacctcctaaagaaggtgaaaaatattttccattaattaaagtc
agtaaaattaatggacaaaatcctaatgtggttagagacagagtctcttttgaacattta
acaccattgtttccgcaacagaaatttgacattgccgaaaagcaaagcacaatttctacc
agaataatggatttgttctctcctataggaaaagggcaacgtggtatgatcgtatcgcag
ccaaaaacaggaaaaaccatgttattaaaggatgttgcaaatgctattgcagcaaaccat
cctgaagtatatcaaatgattttactaattgatgagcgtcctgaggaggtaacagatatg
cagcgtaatgtacgtggtgaagttattgcctctaccttcgataaagaagctcatgagcat
gtaaaaatcgcgaacatcgtgttagaaaaagctaagagattagttgaatgtggtcatgat
gtcgttattcttttagattctattacacgtttagcaagagcttacaatacagttcaacca
gcatcgggtaaaatactaagtggtggtgtagatgctaatgcgctacacaaaccaaaacga
ttctttggtgctgcgagaaatatcgaaaatggaggatctttaactattattgctacggca
ttaacagaaactggttctaaaatggacgaagtgatcttcgaagaatttaaaggaactggt
aatatggagttacaattagatagaaaaatatctaaccgtagaattttccctgctatcgat
cttacatcatccagtacacgtcgtgatgatattttattggatgaaaataccattcaacgt
atgtgggtaatgcgtaagtaccttgcagatatgaacccagttgaagctatggaatttatt
aacgagcgttttaaacaaacaagaaataacgaagagtttttaatctctatgaatggctag
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