Flavobacterium endoglycinae: J0383_01485
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Entry
J0383_01485 CDS
T08015
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
fen
Flavobacterium endoglycinae
Brite
KEGG Orthology (KO) [BR:
fen00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
fen03016
]
J0383_01485
Enzymes [BR:
fen01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
J0383_01485
Transfer RNA biogenesis [BR:
fen03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
J0383_01485
Prokaryotic type
tRNA splicing ligases
J0383_01485
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QSW89499
UniProt:
A0ABX7QGK5
LinkDB
All DBs
Position
complement(347485..348876)
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AA seq
463 aa
AA seq
DB search
MGNKLTGKDLIKLGFPKNNSINIALGQINRYRKREKKESILTEAKDVLLNPEKYEGNGTW
GKVAEGLIKPVQVRMHQLKTTRSPFTIFGENEIDQQAKFQLYDSLKLPISVAGALMPDAH
SGYGLPIGGVLATDNAVIPYGVGVDIGCRMSLSIFDLPASHFKGREHQLEAILRDNTKFG
MNEVQSSRVDHEVFHKSEFQDIPLLKNLLPKAYKQLGSSGGGNHFVEFGIAKIDNPENEW
KLEKGEYFAVLSHSGSRGLGANIAKHYTYLAAKQCPLPKNVQHLAWLDLNTHDGQEYWLA
MNLAGEYAKACHDDIHRRIAKAIGKRVVVTIENHHNFAWKEMVNGQECIVHRKGATPAGE
GQLGIIPGSMTAPGFIVKGKGNAESLNSASHGAGRLFSRAKCKSSFTQSQINKELKKHDV
TLIGGNIDEAPMAYKDITKVMANQTELVEVLGTFTPRIVRMDR
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgggaaataaactaactggaaaagacctgattaaattaggttttccaaagaacaattca
ataaatatcgccttagggcagataaacagatatagaaaaagagaaaaaaaagaatctatt
ctaacagaagcaaaagacgtgctgttaaatcctgaaaaatatgaaggaaacggaacgtgg
ggaaaagttgccgaaggcttaatcaaacctgtccaagtaagaatgcatcagcttaaaaca
acgagatcgccttttaccattttcggtgaaaatgaaatcgaccagcaggcaaaatttcaa
ttatatgattctttgaaactgccaatttcggttgctggtgctttaatgccagatgcgcat
tcgggttacggtctgccaattggtggtgtgttagctactgataatgcggttattccatat
ggagttggtgttgatattggatgccgaatgagcctttcaatttttgatttaccagcttct
cattttaaaggaagagaacatcaactagaagccattttaagagacaatacaaagttcgga
atgaacgaagtgcaatcgtctagagtcgatcatgaggtttttcataaaagcgaatttcaa
gacattccgttgttaaagaatcttttaccaaaagcatataagcaattgggaagttctggt
ggaggaaatcatttcgtagagttcggaatcgctaaaattgacaatccagagaacgaatgg
aaactggaaaaaggagaatattttgccgttttatcacacagcggttctcgtggattgggt
gctaacatagccaaacattacacgtatctggcagctaaacaatgtccgttacccaaaaat
gtgcagcatttagcttggctagatttgaatacacacgatggtcaggaatattggctggca
atgaatttagcaggagaatatgcaaaagcctgtcatgatgatattcacagacgaattgct
aaagcgattggaaaaagagtagtggttacgattgaaaaccatcacaattttgcatggaaa
gaaatggtaaacggtcaagaatgtattgtacacagaaaaggagcaacacctgcaggcgaa
ggtcagcttgggattattccgggttcgatgacagcgccaggatttattgtgaaaggaaaa
ggaaatgcagaaagtttgaattcggcttcgcatggtgctggacgtttgttttcgagagca
aaatgtaaaagcagttttacacaaagtcagattaacaaagaattgaaaaaacatgacgtg
actttaatcggcggtaatattgatgaagctccaatggcttacaaagacatcacaaaagta
atggcaaaccaaacggaattagttgaagttttgggaacttttacacctagaattgttaga
atggatcgataa
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