Flavobacterium endoglycinae: J0383_06365
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Entry
J0383_06365 CDS
T08015
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
fen
Flavobacterium endoglycinae
Brite
KEGG Orthology (KO) [BR:
fen00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fen03032
]
J0383_06365 (topA)
03400 DNA repair and recombination proteins [BR:
fen03400
]
J0383_06365 (topA)
Enzymes [BR:
fen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
J0383_06365 (topA)
DNA replication proteins [BR:
fen03032
]
Prokaryotic type
DNA Topoisomerases
J0383_06365 (topA)
DNA repair and recombination proteins [BR:
fen03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
J0383_06365 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Poly_export
HC2
DUF4294
Motif
Other DBs
NCBI-ProteinID:
QSW90430
LinkDB
All DBs
Position
complement(1498430..1500943)
Genome browser
AA seq
837 aa
AA seq
DB search
MAKNLVIVESPAKAKTIEKFLGSDFQVESSYGHIADLPSKEIGVDVENGFKPKYEVSPDK
KALVTKLKSLSKNAETVWLASDEDREGEAISWHLAEELKLDTKKTKRIVFHEITKSAILK
AIDNPREIDYNLVNAQQARRVLDRLVGYELSPVLWRKIKGGLSAGRVQSVSVRLIVERER
EIQSFNAVATYSIVAEFVNEGGKAFKAKLPKNFNTKKEAEDFLNRNIGSKYKVGDLETKP
TKKSPTAPFTTSTLQQEAARKLYLPVGITMQLAQRLYEAGLITYMRTDSVNLSKEAMDAA
EAEIIKSYGKEYSKPRVFANKNKGAQEAHEAIRPTDMSRHSVNIDRDQARLYDLIWKRTL
ASQMSDAQLERTNVKIEADNHDEVFTASGEVLLFEGFLKVYLEGHDDDEEEQEGMLPALK
VNEKLANNYITATERYSRPPARYTEASLVKKLEELGIGRPSTYAPTISTIINRNYVEKGT
LEGVERNYTQLTLQNSKVGEKVLKENTGSDKGKLVPTDIGTIVTDFLVKNFGNILDYNFT
AKVEQDFDEIAEGNIDWAKMMQDFYNQFHPNVKEVEANAERESGERILGKDADGRQVSVR
LGKFGPMAQIGEADDEDKKFASLMADQNIGNITLEEALNLFLLPKNLGTYKGEEVEVSNG
RYGPYVRHGNMFISLPRGEDPLSVSKERAQELIDEKALADAPIAVYKGEGVQKGVGRFGP
FIKWNGLFVNVSKKYNFDNLSQADVEELIEDKLQKNIDKVIHNWEEEGIVVEKARWGRSV
ILKGKIKIELSKDVDASKLTLAQVQEMIEAKAPAKKTPAKKAAAKKAPAKKTTAKKK
NT seq
2514 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagaatttagtaatagtggagtcacctgcaaaggcaaaaacgatcgagaaattt
ctcgggagcgattttcaggtggagtcaagctatggtcacatagcagacttaccatcaaag
gaaataggggtagatgtagaaaatggttttaaacctaaatacgaagtttccccagataaa
aaagccttggtaacgaaactaaaatcactttctaaaaatgccgaaacggtttggttagca
agcgatgaggaccgcgagggagaggctatttcatggcacttggcggaagaattaaaattg
gatacaaaaaagaccaaacgaattgtttttcacgagattacaaaatctgctattcttaaa
gcaattgataatccaagagaaattgattataatttagtaaatgcacaacaggctagacgt
gttttagatcgtttagtaggttacgaattatctcctgttttatggagaaaaattaaaggc
ggactttctgctggacgtgtacaatctgtatctgtacgtttaattgtagagagagaacgt
gagattcagagctttaatgcagttgcaacgtattcaattgtagcagaatttgtaaatgaa
ggcggaaaagcattcaaagcgaaactgccaaaaaatttcaatacaaaaaaagaagccgaa
gatttcttaaatcgaaacatcggttctaaatataaagtaggagatttagaaactaaacct
actaaaaaatcaccaacagcaccttttacaacttcaaccttgcagcaggaagcagcaaga
aaattgtacttgccggttggaatcactatgcagttagctcagcgtttatacgaagcggga
cttattacttatatgagaaccgactctgtgaatctttcaaaagaagcaatggacgcagct
gaagcagaaatcattaaatcttacggaaaagaatattcaaaacctcgtgtttttgctaat
aaaaacaaaggtgctcaagaagcacacgaggcaattcgtccaacagatatgtctcgtcac
tccgttaatattgatcgtgaccaagctcgtttatacgatttgatctggaaaagaactttg
gcttctcaaatgagcgacgcacagttggaaagaacaaacgtaaaaatagaagcagataat
catgatgaagtttttacagcttctggagaagtattactttttgaaggtttcttaaaagtg
tatttagaaggtcatgatgatgatgaggaagaacaagaaggaatgcttccagctttaaaa
gtaaacgaaaaactagctaataattatattacagctacagaacgatattctagaccgccg
gctcgctatacagaggcttctttagtaaagaagttagaagagcttggaattggtcgtcct
tctacttatgcgccaacaatttcaacaattatcaatagaaattatgttgaaaaaggaaca
ttggaaggtgtagaacgtaattacacacagcttactttgcaaaatagtaaagtaggagag
aaagttctaaaagaaaatacaggttctgataaagggaaattagttccaactgatattggt
accatcgttacggatttcttggtaaagaatttcggaaacattttagattataattttact
gccaaagttgaacaggatttcgatgaaattgctgaaggaaacatcgactgggcaaaaatg
atgcaggatttctacaatcagtttcacccaaatgtaaaagaagttgaagcaaatgctgaa
cgtgaaagcggtgaaagaattctagggaaagatgctgatggaagacaagtttctgttcgt
ttaggaaaatttgggccaatggctcagattggagaagcagatgatgaagataaaaagttt
gccagcttaatggcagatcaaaatattggaaatattactctagaagaagctctgaattta
ttcttgcttcctaaaaatctaggtacctataaaggagaagaagtggaagtgagcaatggt
cgttatggtccttacgttcgtcacggaaacatgtttatttcattgcctagaggagaagat
ccgctgagtgtttcaaaagaaagagctcaggaattaatcgatgaaaaagcattggccgat
gctccaattgcggtttataaaggagaaggtgttcaaaaaggagtggggcgttttggtcca
tttatcaaatggaacggtctttttgtaaacgtaagcaaaaagtacaattttgataattta
tctcaggctgatgttgaagaattaattgaagataagcttcaaaagaatatcgacaaagta
attcataactgggaagaagaaggaattgtagttgaaaaagcacgttgggggcgatcagtg
attttgaaaggaaaaatcaaaattgaattgagtaaagatgttgatgcttcaaaattaaca
ctagctcaggttcaggaaatgattgaagcaaaagctccagctaaaaagactccggcaaaa
aaggcggcagcaaagaaagctccggcaaaaaagacaacagcgaaaaagaaataa
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