Flavobacterium endoglycinae: J0383_10185
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Entry
J0383_10185 CDS
T08015
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
fen
Flavobacterium endoglycinae
Pathway
fen03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
J0383_10185 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fen03400
]
J0383_10185 (mfd)
Enzymes [BR:
fen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
J0383_10185 (mfd)
DNA repair and recombination proteins [BR:
fen03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
J0383_10185 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QSW91153
LinkDB
All DBs
Position
complement(2324287..2327652)
Genome browser
AA seq
1121 aa
AA seq
DB search
MSKNALYTTYDNLPKAQQIATSLLEGNQAKMNISGLLGSAVSFIIRSVFRKTELPFLIVL
DNKEEAAYYLNDLEQMIGEQDVLFYPASFRRPYQIDETDNANVLLRAEVLNRINSRKKPA
VIVTYPEALFEKVVTRRELDKNTLKVALNDKISIDFINEVLFEYEFKRVDFITEPGEFSV
RGGIVDVFSFSNDHPYRIEFFGNEVDSIRTFDVETQLSVETHKKITIIPNVENKLFQENR
ESFLDYIAEKTVLFIQNTEGLFSQLDKQFARAEEAFEKLSKEIKHATPEQLFLNQASFIK
RSLDFSVVELASRPVYKTIKKFEFHIQPQPSFNKQFDLLLNNLSDNHFNGYVNYLFCSND
TQAKRFHDIFESLDEANSENIRKQYHTIVLPLYQGFIDEENQITAYTDHQIFERYHKFNI
KNGYSKKQNITLKELTALSVGDYVTHIDHGIGKFGGLQKIQVEGKTQEAIKLVYADNDIV
YVSIHSLHKISKYNGKDGTPPKIYKLGSNAWKVLKQKTKARVKHIAFNLIQLYAKRRLEK
GFQFAPDSYLQNELESSFIYEDTPDQMKSTAEVKADMESDRPMDRLVCGDVGFGKTEVAI
RAAFKAVDNSKQVAVLVPTTILAYQHYRTFSERLKDMPVSIGYLNRFRTAKQKTQTLKDL
AEGKLDIVIGTHQLVNKNVVFKDLGLLIVDEEQKFGVNVKDKLKTIAANVDTLTLTATPI
PRTLQFSLMAARDLSVITTPPPNRYPIETNVVTFNEEIIRDAISYEIQRNGQVFFINNRI
ENIKEVAGMIQRLVPNARVGIGHGQMDGAKLEELMLGFMNGDFDVLVATTIIESGLDVPN
ANTIFINNANNFGLSDLHQMRGRVGRSNKKAFCYFICPPYSSMTEDARKRIQALEQFSEL
GSGFNIAMKDLEIRGAGDLLGGEQSGFINEIGFDTYQKIMNEAIEELKENEFKDLYPEEN
DIDTKEYVKDIQIDADFELLFPDEYINNVSERLVLYNELGAIKDEAGLQEFEKKLIDRFG
PLPKPAVALLNSIRIKWIATRVGIEKLVLKQGKMIGYFVSDQQSDYYQSVKFRNVLNFVQ
KHSTLCKMKEKQTVNGLRLLLTFENVKSIKRALELMELFEE
NT seq
3366 nt
NT seq
+upstream
nt +downstream
nt
ttgagtaaaaacgccttatatacaacatacgataatctgccaaaagcacagcagattgcc
acaagtttactggaaggaaaccaagcaaaaatgaacatcagcggattgttaggatctgca
gtttcatttattatccgttccgttttcagaaaaaccgaactgccttttctgattgtttta
gacaataaagaagaagccgcttattatttaaacgatttggagcagatgattggcgagcag
gatgtattgttttatcccgcttcatttcgccgtccgtaccaaattgatgaaaccgacaat
gccaatgtcttgcttcgtgctgaggttctaaatagaattaattctagaaaaaaaccagcc
gtaattgttacgtatccagaagcactttttgaaaaagtagttacaaggagagaactggat
aaaaatactttaaaagtcgcgctgaacgataaaatttcgatcgattttatcaacgaagtg
ttatttgaatacgaatttaaaagagtagatttcatcacagaacccggcgaattttcagtc
cgcggaggtattgtcgatgtattttctttttcaaacgatcatccttaccgaattgaattt
ttcggaaatgaagtagacagcattagaacttttgacgttgaaacgcaattgtccgtagaa
acccataaaaaaatcacgattatcccgaatgtggagaacaaactttttcaggaaaaccgt
gagagcttcttagattatattgccgaaaaaacagttcttttcatccaaaatactgaagga
ctttttagtcagttggacaaacaattcgcaagagcagaagaagcttttgagaaactttcg
aaagaaataaaacacgccacgccagaacaattatttttaaatcaggcgtcatttataaaa
agatctttggatttttcagttgtagaattggcttcaagacccgtttataaaaccattaaa
aaattcgaatttcatattcagccgcagccatctttcaacaaacaatttgatttattgctg
aacaatttgagcgataatcattttaacggatatgtaaattatctgttttgttcgaatgat
acgcaggcaaaacgtttccatgatatttttgaaagcttagacgaagccaattcagaaaat
ataagaaagcaatatcatactattgtactgcctttgtatcaaggttttattgatgaagaa
aatcaaataacggcttacaccgatcaccagatttttgagcgttatcataaattcaacatc
aaaaatgggtattctaaaaagcagaatatcactttaaaagaattaacggcactttctgta
ggcgattatgtaacgcatatcgatcacggaattgggaaatttggcggattgcagaaaatt
caggtggaaggcaaaacgcaggaagccataaaattggtgtatgccgataatgatattgtg
tatgtgagtattcactcgcttcataaaatctcgaaatacaacggaaaagacggtacgcct
ccgaaaatctataaattgggttcgaacgcttggaaggttttaaaacagaaaaccaaagct
cgcgtcaaacatattgcattcaacttgattcagctgtatgcaaagcgtcgtttagaaaaa
ggatttcagtttgcgccagacagttatcttcaaaacgaattggaaagttcgtttatttac
gaagatacgccagaccaaatgaaatcgacagcggaagtaaaagccgatatggaaagcgat
cgcccaatggatcgtttggtttgtggtgatgttggtttcggaaaaacagaggttgccatt
cgtgctgcttttaaagcggttgacaacagcaaacaagtagcggttttggttccaacaacc
attttggcgtatcagcattatagaactttttcggaacgtttaaaagatatgccagtttca
attggttacttaaaccgatttagaacagcgaaacaaaaaacacagactttaaaagattta
gccgaaggaaaactcgatatcgttattggaacacatcaattggtcaataaaaatgtggtt
tttaaagaccttggtttattgattgtcgatgaggaacagaagtttggagtaaacgtaaaa
gataaattaaaaacgattgctgcgaatgttgatacattgacattgacagcaacgccaatt
ccgagaactttacagttttcattaatggcagcacgagatttatcggtaattacaacacct
ccgccaaatcgttatccgattgaaacgaatgtggttacttttaatgaagaaattattcgt
gatgcgatttcgtatgaaattcaacgaaacggacaggttttctttatcaataaccgaatt
gaaaatataaaagaagtggcaggaatgattcagcgtttggttccaaatgcaagagtcgga
attggccacggacaaatggacggagctaaactcgaagaattgatgttaggtttcatgaac
ggagattttgatgttttggtcgccactacaatcatcgaaagcgggttggacgttccaaat
gccaacacgattttcatcaacaacgccaataatttcggattatcagatttgcatcaaatg
cgcggccgtgttgggcgaagcaataaaaaagcattctgttatttcatttgtccgccatat
tcatcaatgactgaagatgccagaaaacgtattcaggcgttggaacaattcagtgaattg
ggaagcggtttcaatattgcgatgaaagatttggagattcgcggtgcgggagatttatta
ggaggagaacaaagcggtttcattaatgaaattggttttgatacgtaccaaaaaatcatg
aatgaagcgattgaagaattgaaggaaaacgaattcaaagatttgtatcctgaagagaat
gatatcgatacaaaagaatacgtaaaagacattcaaatcgatgccgatttcgagttacta
ttcccagatgaatatatcaataacgtttcagaacgtttggttttatacaacgaattaggc
gcgataaaagacgaagctggtttacaggaatttgagaaaaaactaatcgatcgtttcgga
ccattgccaaaacctgctgttgccttattaaacagcatcagaattaaatggattgcaaca
agagtaggaatcgagaaattagtcttgaaacaaggcaaaatgattggttatttcgtttca
gatcagcaatcagattattaccaatccgtgaaattcagaaatgttttaaacttcgttcaa
aaacatagtacactgtgcaaaatgaaagaaaaacaaaccgtaaacggattacgtttgtta
ttgacttttgaaaatgtaaagtcgataaaacgagcattggagttgatggaattgtttgaa
gaataa
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