Flavobacterium endoglycinae: J0383_15300
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Entry
J0383_15300 CDS
T08015
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
fen
Flavobacterium endoglycinae
Pathway
fen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J0383_15300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fen03019
]
J0383_15300
03400 DNA repair and recombination proteins [BR:
fen03400
]
J0383_15300
Enzymes [BR:
fen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
J0383_15300
Messenger RNA biogenesis [BR:
fen03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
J0383_15300
DNA repair and recombination proteins [BR:
fen03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
J0383_15300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
TrmB
DnaD_N
DUF1949
HTH_9
DUF3781
NirdL-like_HTH
Motif
Other DBs
NCBI-ProteinID:
QSW87647
LinkDB
All DBs
Position
complement(3453675..3455570)
Genome browser
AA seq
631 aa
AA seq
DB search
MQDAQEILLKYWKHESFRPLQKEIIDSVLEGQDTFALLPTGGGKSICFQVPAMMREGICL
VISPLIALMKDQVANLQKRDIKAIALTGGIHTEEIINLLDNCQFGNYKFLYLSPERLQSD
WILERIKNLPINLIAIDEAHCVSQWGHDFRPAYLKISELKKYFPKIPFLALTATATPRVV
EDIKTELGLKDTKLFQQSFERKNIAYMVFEVEDKLYRVEQILKKNPQPSIIYVRNRKSCL
NMSTQLQSLGFRATYYHGGLSAQEKDKNMQLWMSEQAQVIVATNAFGMGIDKDNVKTVIH
TQLPENLENYYQESGRAGRNGEKSFSILLFNNSDANQTEQQFLSVLPDKKFLKTMYVKLC
NYFQIAYGEGIDESYSFKMNHFCNKYDFPTLKTYNALQFLNQQGIITMSQEFSEKVTMQF
LIESKEVIRYMSLNSNDEEIILAILRTYPGIHEMKTAINLPLIAKKSNHTEAQVTAVLEK
LKEKDIIEYKSKNNDATILFNEVREDDLTINRVSKYLEKQNKLKRDQLSSVLYYIKEDKT
CKNRLVLDYFGEKADSNCGVCSYCITQKGKITEADSIADKILHLLKATALTSREIQNQIK
LDTKDVLSVLQELLENNHVVILSNNKYTLKT
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atgcaggatgcacaagagattcttttaaaatactggaaacacgaaagtttccgaccattg
caaaaggaaattattgattcggttttagaaggtcaggacacttttgcgctacttccaacc
ggcggaggaaaatcaatttgttttcaggttccagccatgatgcgtgaaggaatctgcctt
gtaatctcacctttaattgcgctgatgaaagatcaggtagcaaatctgcaaaaaagagac
attaaagctatcgctcttactggaggaattcataccgaagaaattattaatcttctcgac
aactgccaattcgggaattacaaattcctctacctttcacctgaacgcctgcaatcggat
tggattttagaacgaatcaaaaatcttcctatcaatttaattgctattgatgaggcgcac
tgcgtttcgcaatggggacacgatttcagaccggcttatttaaaaatttcagaattaaaa
aaatacttccctaaaattccatttttagctttaactgcgacagcaactccaagagtcgtt
gaagacattaaaacagaactcggactaaaagacaccaaactttttcagcagtcttttgaa
agaaagaatattgcttacatggttttcgaagtcgaagataaattataccgtgttgagcag
attttgaagaaaaacccacagccttctatcatatatgtccgcaatagaaaatcctgcctt
aatatgtcaacccaattacagtcgctgggttttagagcaacgtactatcacggcggactt
tcggctcaggaaaaagacaaaaacatgcagttgtggatgtcggaacaggcacaagttatt
gtggctacgaatgcatttggaatgggaattgacaaagacaatgtcaaaacggttattcat
actcaattacctgaaaacttagaaaattattatcaggaatctggacgtgcggggcgaaat
ggagaaaaatctttttcaattttgctttttaataattcagacgccaatcaaaccgaacag
caatttttaagtgttcttcctgataaaaaatttctgaaaactatgtacgtcaaactttgc
aattattttcagattgcctatggcgaaggcatagacgaatcgtactcgtttaaaatgaat
catttttgtaataaatatgattttccgactttaaaaacgtataatgcacttcagtttctg
aaccagcagggaatcattacaatgtctcaggaattttctgaaaaagtaacgatgcagttt
ttaatcgaatcaaaagaagtcattcgatatatgagtttgaattctaatgatgaagaaatt
attctggcgattttaagaacatatccaggaattcatgaaatgaaaacggctattaatctg
cctttgatcgcaaaaaaatcaaatcacacagaagctcaggtcacagcagtcctagaaaaa
ctcaaagaaaaagacatcatcgaatacaaatctaagaacaatgacgcgactattttattt
aatgaagtccgtgaagatgacttgaccataaaccgagtttctaaatatcttgaaaaacag
aacaaactgaaaagagatcagctttcgtctgttctttattatataaaagaagacaagacc
tgtaaaaacagattggttttagattattttggagaaaaagccgattcgaactgcggcgtc
tgctcctactgcattacccagaaaggaaaaatcaccgaagccgattcgattgctgataaa
atcctccatttattaaaagcaactgccttaacttcgcgcgaaattcaaaatcagataaaa
ttagatactaaagatgttctttcggttcttcaggaattattagaaaacaatcatgtggtt
attttatccaataataaatacactttaaaaacctaa
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