Flavobacterium endoglycinae: J0383_15375
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Entry
J0383_15375 CDS
T08015
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
fen
Flavobacterium endoglycinae
Pathway
fen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J0383_15375 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fen03019
]
J0383_15375 (rny)
Messenger RNA biogenesis [BR:
fen03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
J0383_15375 (rny)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
KH-I_KHDC4-BBP
HTH_37
Motif
Other DBs
NCBI-ProteinID:
QSW87661
LinkDB
All DBs
Position
complement(3470043..3471602)
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AA seq
519 aa
AA seq
DB search
MDTITIIIGIVGIAAGFAIAKIIEKSNISNLIKNAKKEAASILKDANLEAENIKKDKILQ
AKERFIELKAEHEQVILARDKKVAEVEKRVRDKESQVSNELSKAKKVNDEFEAKTAEYIN
KIEVLDKKQAEVDKLHKSQLQQLEVISGLSAEEAKEQLVEGLKAEAKSKAMSHIQETIEE
AKLTAQQEAKKIIINTIQRVGTEEAVENCVSVFNIESDDVKGRIIGREGRNIRALEAATG
VEIIVDDTPEAIILSCFDPVRREIARLSLHKLVTDGRIHPARIEEVVAKTAKQIDDEIIE
VGKRTVIDLGIHGLHPELIKVVGRMKYRSSYGQNLLQHSREVSKLCGIMAAELGLNVKLA
KRAGLLHDIGKVPDTESDLPHALLGMQWAEKYGEKDEVCNAIGAHHDEIEMKSLLSPIVQ
VCDAISGARPGARRQVLDSYIQRLKDLEDVAYGFSGVKNAYAIQAGRELRVIVESEKVSD
DNAANLSFEISQKIQTEMTYPGQVKVTVIRETRAVNIAK
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atggacaccataacgatcattattggtattgtaggtattgcagctggttttgcaatagct
aaaattatcgagaaaagtaatatttcaaacctaatcaaaaacgctaaaaaagaagctgct
tcaatcttgaaagatgctaatttagaggctgaaaatattaaaaaagataaaattcttcag
gcaaaagagcgttttatcgagttaaaagcagagcacgaacaagttattttagcaagagat
aaaaaagtagctgaagtagaaaaaagagtgcgtgataaagaatctcaagtttctaacgag
ctttcgaaagccaaaaaagtaaatgacgaatttgaggctaaaacggctgaatacatcaat
aaaattgaagttttagacaaaaaacaagcagaagtagacaaattacataaaagccaatta
caacaacttgaagtaatttcgggcctatctgcggaagaagcaaaagaacagctggtagaa
ggtttaaaagctgaagctaaaagcaaagcaatgtctcatattcaagaaactattgaagag
gcaaaacttacggcgcaacaagaagcgaaaaaaatcattatcaataccatccagcgtgta
ggaactgaagaagcagtagaaaactgtgtttctgttttcaacattgaatctgacgatgta
aaaggacgtataattggtcgtgaaggtcgtaacattagagctcttgaagctgcaactggt
gttgaaattattgtagacgatactcctgaagcaatcatactttcttgttttgatcctgtt
cgtagagaaattgctcgtttgtctttacacaaattagtgactgacggacgtattcaccct
gctcgtattgaagaagtagttgctaaaacagcaaaacaaatcgacgatgaaattatagaa
gtaggtaaacgtactgtaatcgacttaggaattcatggtttacacccagaattaattaaa
gtagttggtcgaatgaaataccgttcttcttacggacaaaacttattgcagcactcgaga
gaagtttctaaactttgcggtatcatggctgctgaattaggactaaacgtaaaactggca
aaaagagcaggtttactacacgatattggaaaagtgcctgatactgaaagtgatttacca
cacgctttattaggaatgcaatgggctgagaaatacggagaaaaagacgaagtatgcaac
gctattggagctcaccatgacgagattgaaatgaaatcattactttctccaattgttcag
gtttgtgacgctatttcaggagcaagacctggggcaagacgtcaggtattagactcatac
attcagcgtttgaaagatcttgaagatgtagcttacggattcagcggagttaaaaatgct
tacgccatccaagcaggtagagagcttcgtgtaattgtagagagtgaaaaagtttctgat
gataacgctgcaaacttatcatttgaaatttctcaaaaaattcaaactgaaatgacttat
ccaggtcaagttaaagtaactgtaattagagaaaccagagcagttaatattgcgaagtaa
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