Flavobacterium endoglycinae: J0383_18495
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Entry
J0383_18495 CDS
T08015
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
fen
Flavobacterium endoglycinae
Pathway
fen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J0383_18495
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fen03019
]
J0383_18495
Enzymes [BR:
fen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
J0383_18495
Messenger RNA biogenesis [BR:
fen03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
J0383_18495
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Fe-ADH
P-loop_SecA
ERCC3_RAD25_C
CMS1
Motif
Other DBs
NCBI-ProteinID:
QSW88241
UniProt:
A0ABX7QCV4
LinkDB
All DBs
Position
complement(4148650..4149897)
Genome browser
AA seq
415 aa
AA seq
DB search
MLFEDLSLSKSIQKAVFEEGYLNPTPIQEKSIPIVLAGRDLIGCAQTGTGKTAAFAIPII
HQLHRIVGSSKKAKQIRALVVTPTRELAVQIGQSFDTYSKYTNLVQLTIFGGVSQNPQVE
ALKNGVDILVSTPGRLLDLHKQGFLDLNHLHTLVLDEADQMLDMGFINDVKKIIKLTPKN
RQTLLFSATMPLAIRELAEMFLQDPEKVEVSPVSSTAENVEQRIYFVDKTEKRNLLYHLI
KNENLSNVLVFSRTKHGADNVVKALRKKDIPAEAIHGDKSQNARQRVLDAFKNKEVGVLV
ATDIAARGIDIEQLPYVINFDLPNIPETYVHRIGRTGRAGNGGIAISFCGKDEHPYWKDI
QKLIKVDVKVISDHPYPWHAGSPEPGEKPKNSNRSGDAHKSRKSNASKRNKKRWY
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atgttattcgaagatttatcactttcaaaaagtatacaaaaagccgtatttgaagaaggc
tatctaaatcctactccaattcaagaaaaatccattccgattgttttggcaggaagggat
ttaattggctgtgcacagacgggaacggggaaaacggcagcatttgctattccaattata
caccaattgcaccgaattgtaggctcatcaaaaaaagccaaacaaattcgcgctcttgta
gttacacctacacgagaactcgcagtacaaatcggacaaagttttgacacgtattctaaa
tataccaatttagtacaactcactatttttggaggagtttcgcaaaatccgcaagttgaa
gctttaaaaaatggtgttgacattctggtttctactccaggtcgtttattggatttacac
aaacaaggttttctagatttgaatcatctgcacactttagtattagatgaagccgatcaa
atgctggatatgggttttataaatgatgtaaaaaagattataaaactgactccaaaaaac
agacagacattattgttttctgctacaatgcctttggcaatacgcgaattggcagaaatg
tttttgcaggatcctgaaaaagtagaagtttctccggtttcatcaactgcagaaaatgtt
gaacagcgcatttattttgttgacaaaacagaaaaacgaaatctgctgtatcatttaatt
aaaaatgaaaatttatcaaacgtgttggttttttccagaaccaaacacggcgctgataat
gtggtgaaagcattgcgtaaaaaagatattcccgcagaagctattcatggagacaaatct
caaaatgcaaggcagcgtgttttagatgcatttaaaaataaagaagtaggcgttttagta
gcaaccgatattgccgcaagaggaattgatatcgaacagcttccttacgtaatcaacttt
gatcttccgaatattcctgaaacctatgttcaccgaattggtcgtacaggccgcgctgga
aatggaggaattgctatttctttctgtggaaaagacgaacatccgtactggaaagacatt
caaaaattaattaaggttgatgtaaaagtcatttcagatcatccatatccgtggcatgct
ggaagtcctgaaccgggagaaaaacctaaaaattcaaacagaagcggtgacgctcacaaa
tcgagaaagtcaaacgcatcaaaaagaaacaaaaaacgctggtattaa
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