Ferrovibrio terrae: FNB15_12020
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Entry
FNB15_12020 CDS
T06089
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
fer
Ferrovibrio terrae
Pathway
fer03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fer00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FNB15_12020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fer03019
]
FNB15_12020
Enzymes [BR:
fer01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FNB15_12020
Messenger RNA biogenesis [BR:
fer03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FNB15_12020
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Fe-ADH
AAA_22
Utp25_C
CMS1
Motif
Other DBs
NCBI-ProteinID:
QDO97949
UniProt:
A0A516H2F1
LinkDB
All DBs
Position
complement(2462812..2464212)
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AA seq
466 aa
AA seq
DB search
MTSFNDLGLNPALLTAITAGKYTQPTPIQAQAIPPVLQGRDLLGIAQTGTGKTAAFALPI
LHRLAAGNRRPAPKTCRALILSPTRELASQIAEKFRAYGHDSKLSVATVFGGVGMNPQVQ
ALARGVDVLVATPGRLMDHMQQGTLRLDAVETVVLDEADQMLDLGFVHAIKRISQALPKQ
RQSLFFSATMPQNIAQLAAGFLKDPVRVEVTPAATTVERIDQQVVFIEAERKRALLLEIM
ADPTITRALVFTRTKHGADKVARHLGTGNVPAAAIHGNKSQSQRERALADFKAGRIRVLV
ATDIAARGIDVTGVSHVVNFELPNVPESYVHRIGRTARAGKDGMAISLCAQDERAYLRDI
EKVTRQRIPSTDRRGDEKLAAATAAEPRGENRPQQPRPHGHGQNRGGQRSENRRGDSNGG
HRSESRGGQPQGAKPGQKPAGGRRFGKPQGQRPSGNRDGGQRGSVH
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
ttgaccagctttaatgatcttggcctcaacccggccctgctcaccgccatcacggcgggc
aaatacacccagcccaccccgatccaggcccaggcaatcccgccggtgcttcagggccgc
gacctgctcggcatcgcccagaccggcaccggcaagaccgccgccttcgccctgccgatc
ctgcatcgcctcgcggccggcaatcgccgcccggcgcccaagacctgccgcgcgctgatc
ctgagcccgacccgcgaactggcctcgcagatcgccgagaagttccgcgcctatggccat
gactccaagctgagcgtcgccaccgtcttcggcggcgtcggcatgaacccgcaggtgcag
gcgctggcccgcggcgtcgacgttctggtcgccacccccggccgcctgatggaccatatg
cagcagggcacgctgcgcctcgacgccgtcgagaccgtcgtgctggatgaagccgaccag
atgctggatctcggcttcgtacatgcgatcaagcgcatctcgcaggccctgcccaagcag
cgccagagcctgttcttctcggccaccatgccgcagaacatcgcgcagttggctgccggc
ttcctgaaggatccggtgcgcgtggaagtgaccccggccgccaccacggtcgagcgtatc
gatcagcaggtggtcttcatcgaagccgagcgcaagcgcgcgttgctgcttgagatcatg
gccgacccgaccatcacccgcgctctggtcttcacccgcaccaagcatggtgccgacaag
gttgcccgccatctcggcaccggcaacgtgccggccgccgcgatccatggcaacaaatcg
caaagccagcgcgagcgtgccctggccgacttcaaggctggccgcatccgcgtgctggtc
gccaccgacatcgctgcccgcggcatcgacgtcaccggcgtcagccatgtggtgaatttc
gaactgccgaatgtcccggaaagctacgtgcaccgcatcggccgcaccgcgcgcgccggc
aaggacgggatggcgatttcgctctgcgcgcaggacgagcgcgcttacctgcgcgacatc
gagaaggtgacgcgccagcgcatcccttcgaccgaccgtcgcggcgacgagaaactggcg
gctgccaccgctgccgagccgcgcggcgagaaccgtccgcagcagccgcgtccgcacggc
catggccagaatcgtggtggccagcgtagcgagaatcgacgcggcgacagcaacggcggt
catcgcagtgaaagccgtggcggccagccgcagggcgcgaagccgggccagaagccggcc
ggtggtcgccggttcggcaagccgcagggccagcgccccagcggtaatcgtgacggcggc
cagcgcggcagcgttcactga
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