Ferrovibrio terrae: FNB15_17225
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Entry
FNB15_17225 CDS
T06089
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
fer
Ferrovibrio terrae
Pathway
fer03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fer00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FNB15_17225 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fer03400
]
FNB15_17225 (mfd)
Enzymes [BR:
fer01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FNB15_17225 (mfd)
DNA repair and recombination proteins [BR:
fer03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FNB15_17225 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
MFD_D3
Cas3-like_C_2
UB2H
AAA_16
RecG_dom3_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QDO98903
UniProt:
A0A516H528
LinkDB
All DBs
Position
complement(3526588..3530133)
Genome browser
AA seq
1181 aa
AA seq
DB search
MTFVLPDILTRPGRWALAGSPEGQDARLLAALAQRQKGRGVLHVCRDDARMATLEAALKF
FAPDLPVLTLPAWDCQPYDRVSPIAEIAARRMDTLNRLSGERPDVPWLLLTTVNAALQRL
PQPDWFKGTGFRAAKGGRVKPETLIGYLGRNGYSRVSTVNEPGEYAVRGGLVDLFPPGTE
APYRLDFFGDEVENIRRFDPATQRTIDAVTELSLTAMSEVPMDEDSIARFRSGYRELFGT
VTKEDPLYEAVSAGRRQIGMEHWLPLFFERLSTVFEYLPQAAVTLDHLTGDAVDERFKAI
ADHYDARKSAMKRGLEEGGSPYKPLPPDRLYLTAGEWTARLEKFPVGALFPFEAVGGPDV
KVVDLNARPGRDFAPERTQAAQAAEKKASVVSVYDALGGHIARQTGQGRRVLFATFSVGA
RDRLALVLKDHGLPMPQAIETARDIETVPKAVPAIAVLPIEHGFEAGDLCVVAEQDILGD
RLVRPRQKKRRAENFIAEASALQPGDYVVHIDHGIGQYKDLVTLDVAGAPHDCLLLHYDG
GDRLYLPVENIEMLSRYGSPEADVTLDKLGGVGWQNRKARMKQRLKDMAGELMKIAAQRE
LRQGERVIPQEGLYEEFCARFPYEETEDQERAINETLDDLSSGKPMDRLICGDVGFGKTE
VALRAAFAAAMSGQQVALVCPTTLLCRQHYRTFFERFRGLPLRIEQLSRMVTAKSAKDTK
AGLTDGTVDIVIGTHALLSKSIDFKRLGLLIIDEEQHFGVKHKERLKEIKAEVHVLTMSA
TPIPRTLQLALSGVRELSLIATPPVDRLAVRTFVTPFDGVVIREALLREHFRGGQSFFVC
PRIEYLDTAMAFIRDHVPELKAVVAHGQMAPTDLDDVMNAFYDRRYDVLVATNIVESGLD
IPSANTLVVYRADLFGLAQMYQLRGRVGRSKLRAYSYFTYQGGRLLSTSAEQRLHVLQSL
DTLGAGFSLASHDLDLRGSGNLLGEEQSGHIREVGFELYQEMLQEAIAAARSAARGDVSA
LSEKWSPQIQIGTAVLIPDSYIADLNLRMQLYRRVADLENRTDIDAFAAELIDRFGPLPE
EVHHLLDIVAIKKFCLEANILKIEAGPKGATLTFRDNTFADPAGLVLFIQSERGAKLRPD
HKVVLMRDWPEPQDRLKGVLHASLRLAEIATKAKTRIVKKA
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
atgacctttgtgctgccggatattctgacccggccgggccgctgggcattggccggcagc
ccggaagggcaggatgcgcgcctgctggctgccctggcgcagcggcagaagggccgcggc
gttctgcatgtctgccgcgacgacgcgcgcatggcgacgctggaagcggcgctgaagttc
tttgcccccgatctgccggtgctgaccttgccagcctgggactgccagccttatgaccgc
gtctcgccgattgccgagatcgccgcccggcgcatggacacgctgaaccgcctgtccggc
gagcggcccgatgtgccatggctgctgctgaccacggtgaacgccgcgctgcagcgtctg
ccgcaaccggactggttcaagggcacaggcttccgcgccgccaagggcggccgggtgaag
ccggaaacgctgatcgggtatctcggccgcaatggctacagccgcgtctccacggtgaac
gaacccggcgagtatgccgtgcgcggcggcctggtcgacctgttcccgccgggcaccgag
gcgccgtaccggctggatttcttcggtgacgaggtcgagaacatccgccgtttcgatccg
gccacccagcgcaccatcgacgccgtgaccgaactgtcgctgacagccatgagcgaagtg
ccgatggatgaagactccatcgcgcgtttccgcagtggctatcgcgagttgttcggtacc
gtcaccaaggaagacccgctctatgaagcggtatcggccggtcggcgccagatcggcatg
gaacactggctgccgctgttcttcgagcggctatcgaccgttttcgaatacctgccgcag
gcagcagtgacgctcgatcatctgaccggcgacgcggtcgatgaacgcttcaaggcgatt
gccgatcactacgatgcgcgcaagtcggcgatgaagcgcgggttggaagagggcggttcg
ccttacaaaccgctgccgccggaccggctgtatctgacggccggcgaatggacggcgcgg
ctggagaaatttccggtcggcgcgctgtttccgttcgaagctgtcggcggcccggatgtg
aaggtggtcgacctgaatgcccggccaggccgcgacttcgcccctgaacgcacccaggca
gcgcaggcggctgagaagaaggcttcggtggtcagcgtttatgacgcgctgggtggccat
atcgccaggcagaccgggcaggggcgtcgggtcctgttcgccaccttctctgtcggtgcg
cgcgaccgtctggccttggtgctgaaagaccatggcctgccgatgccgcaggccatcgag
acggcccgcgatatcgagaccgtaccgaaggcggtgccggccattgccgtgctgccgatc
gagcatggtttcgaggctggcgatctctgcgtggtggccgagcaggatattctgggcgac
cgtctggtgcggccgcgccagaagaagcgccgggcggagaatttcatcgccgaggccagc
gcgctgcaaccgggcgactatgtcgtgcatatcgatcacggcatcggccagtacaaggat
ctggtgacgctggatgtggccggcgcgccgcatgactgcctgctgctgcattacgacggc
ggcgaccggctgtatctgccggtcgagaatatcgagatgctgtcgcgctacggctcgccc
gaagcggacgtgacgctggacaagcttggcggcgtcggctggcagaaccgcaaggcgcgc
atgaaacagcgcctgaaggacatggccggcgagctgatgaagatcgctgcccagcgcgag
ctgcggcagggtgagcgcgtaattccgcaggaaggcctgtacgaggaattctgcgcccgc
ttcccctacgaagagaccgaagaccaggaacgcgccatcaacgagacgctggacgacctc
tccagcggcaagccgatggatcgcctgatctgcggcgatgtcggttttggcaagaccgaa
gtggcgttgcgggcggcctttgcggccgccatgtcgggacaacaggtggctctggtctgc
ccgacgacgctgctgtgccgccagcattaccgcaccttcttcgagcgcttccgtggcttg
ccgctgcgcatcgagcagctgtcccgcatggtgacggccaagtcggccaaagacaccaag
gccggcctgacggacggcacggtcgatatcgtgatcggcacgcatgccctgctgtcgaag
agtatcgacttcaagcgtctcggtctgctgattatcgatgaggagcagcatttcggcgtc
aagcacaaggagcggctgaaagagatcaaggccgaagtgcatgtgctgaccatgtcggcg
acgccgatcccgcgcacgctgcagctggcgctgtcgggcgtgcgcgaactcagtctgatc
gccaccccgccggtcgatcgtctggcggtgcgcaccttcgtgacgcccttcgacggcgtg
gtgatccgcgaggcgctgctgcgcgagcatttccgcggtggccagagcttcttcgtctgt
ccgcgcatcgaatatctcgatacggccatggcttttatccgcgatcatgtgccggaactg
aaagccgtggtggcgcatggccagatggcgccgaccgatctggacgacgtgatgaacgcc
ttctacgaccggcgctacgatgtgctggtggcaactaatatcgtcgaaagcggactcgac
atcccgtcggccaatacgctggtggtctatcgcgccgacctgttcggtctggcgcagatg
tatcagctgcgcggtcgcgtcggccgttccaagctgcgcgcctattcctatttcacctat
cagggcggccgtctgctcagtacgtcagccgagcagcgcctgcatgtgctgcagagcctg
gataccctgggtgcgggcttcagtctggcgtcacatgacctcgacctgcgcggctcgggc
aatctgctgggcgaggagcagtccgggcatatccgtgaagtcggtttcgagctgtatcag
gagatgctgcaggaggcgattgcggcagcccgttctgcggcgcgtggcgacgtcagcgcg
ctgagcgagaaatggtcgccgcagatacagatcggtacggccgtgctgattccggacagc
tatatcgctgacctgaacctgcgcatgcagttgtaccgccgtgtcgccgatctggagaac
cgcaccgatatcgatgccttcgccgccgaactgatcgaccgatttggaccattgccggaa
gaggttcaccacctgctcgacattgtggcgatcaagaagttctgcctggaagcgaatatc
ctgaagatcgaggccggcccgaagggtgcgacgctgaccttccgcgacaacacctttgcc
gatccggccgggctggtgctgttcatccagtcggaacgcggcgccaagctgcggcccgat
cacaaggtggtgctgatgcgcgactggccagagccgcaggatcgcctgaaaggcgtgctg
catgcctcgctgcggctggccgagatcgccaccaaggcgaagacgcggatcgtcaagaaa
gcctga
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integrated database retrieval system
