Ferrimonas lipolytica: HER31_00720
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Entry
HER31_00720 CDS
T06529
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
fes
Ferrimonas lipolytica
Brite
KEGG Orthology (KO) [BR:
fes00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
fes03009
]
HER31_00720 (rlmD)
Enzymes [BR:
fes01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
HER31_00720 (rlmD)
Ribosome biogenesis [BR:
fes03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
HER31_00720 (rlmD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Methyltransf_25
Methyltransf_11
Motif
Other DBs
NCBI-ProteinID:
QIZ75556
UniProt:
A0A6H1UBH0
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All DBs
Position
151909..153249
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AA seq
446 aa
AA seq
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MAQFFSPKSNKKKSLAAAIEVSIDSLDHQGQAVAQHQGKIVFVDGLLPQERAKVRIEKDK
GRYAKGKLIKRLSANSARVAPACPHFDSCGGCQLQYASSEGQQQFKQQTLTKLVQHHLSV
AEITLAPTIKADPWRYRRRARLGAQVHQGQLCLGFRQEQSNNLVSIDSCAVLAKPLDNLI
APLAKAIGPTPLAKQLGHIDLLLADEGAVAVLRVMRAPKPKELERLTAVAVEHQCMVLLH
DGDQLTTLDGEAPQLLHYQTGPELPSVAFMPGDFFQVNDSVNQQMIAQAIDWLQPKVDEV
GLDLFCGGGNFSFPLASLSLQVTGVEGIESMALRARQQAKALGVGNVNFFSTDLNGEIPT
ADWASQPVDWVLLDPARAGAAGTLQWMTALAPKRILYVSCSPLTLAQDAKVLQAQGYSLS
KLGLIDMFPHTGHLESMALFVANVKK
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atggcacagttcttctctcccaaatccaataaaaagaaatcgttagcagctgcaattgag
gtttctatcgatagcctcgaccatcaaggtcaagcggtcgcgcagcatcagggcaaaata
gtgtttgtcgatggcttgctgccacaggagcgtgccaaggttcgaatcgaaaaagacaag
ggtcgttatgctaagggcaagctgatcaaacggttgagtgccaactcggctcgagtagcc
ccggcttgtccgcattttgatagctgtggcggctgccagctgcaatacgccagcagtgaa
ggacaacagcaatttaaacagcaaaccctgactaagttggtgcagcaccatctgagtgtt
gccgagattacgttagcgccgaccatcaaggctgatccttggcgttatcgccgccgcgca
cgcttgggcgcacaggtgcatcaaggtcaactgtgtttgggcttccgtcaagagcaaagc
aacaacttggtgagtatcgatagctgtgcggtgttggccaagccacttgataacctgatt
gcaccattggccaaagcgattggaccaacgccgcttgcgaagcaattgggtcatatcgat
ctgctgctggcggacgagggagcagtggcagttttgcgagttatgcgtgcccctaagccg
aaggagttggagcggttaaccgcggtagcggttgaacatcagtgtatggtgttgctgcac
gatggtgaccagctcactaccttagatggcgaagcaccacagctgctgcattaccaaacc
ggcccagaactgccatcggtagcgtttatgccaggggatttctttcaggttaacgacagt
gtcaaccaacagatgattgcgcaagctatcgattggctccaacctaaagtcgatgaggta
ggcttagatttgttctgcggtggcggtaacttcagttttccgttggcaagcttgtccctg
caagttacaggtgtcgagggaatagagtcgatggcgttacgcgcgcgacagcaagccaaa
gcccttggggttggcaacgttaacttttttagcaccgatcttaatggtgaaattcctacg
gctgactgggccagtcagcccgttgattgggtcttgctggatcctgctcgcgccggtgct
gctggaaccttgcaatggatgaccgcattggcccctaagcgcattctttatgtgtcgtgt
tcaccgctgaccttggcgcaagatgccaaagtgttacaagctcaaggatattcgcttagc
aaacttggtctgatagatatgttcccgcatactggccatctggagtcgatggcgttgttt
gttgccaacgttaagaagtaa
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