Ferrimonas lipolytica: HER31_01475
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Entry
HER31_01475 CDS
T06529
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
fes
Ferrimonas lipolytica
Pathway
fes03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fes00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HER31_01475
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fes03019
]
HER31_01475
03009 Ribosome biogenesis [BR:
fes03009
]
HER31_01475
Enzymes [BR:
fes01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HER31_01475
Messenger RNA biogenesis [BR:
fes03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HER31_01475
Ribosome biogenesis [BR:
fes03009
]
Prokaryotic type
rRNA helicases
HER31_01475
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QIZ75687
UniProt:
A0A6H1U9G7
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All DBs
Position
complement(315123..317027)
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AA seq
634 aa
AA seq
DB search
MSNSCDFSSLGLPEALLSAVTSMGFTSPTPIQAQSIPFMLEGNDILGEAQTGTGKTAAFG
LPALAGIDPRQRASQMLVLAPTRELAIQVATALEEFAVNIKGLRVTTLYGGQPYAPQLRD
LERGSQVVVATPGRLMDHIRRGSLKLDSIQCCVLDEADEMLNMGFLEDIEWILEHLPEQT
QMALFSATMPNQIRRIAERFLKDPKHVKIAADKAQKSNIVQKAWKVSGLNKTTALERLAE
TLDYDAMIVFVRTRNDTMELANHLNTLGFKAAALNGDMSQQQREHTVAQLHKGKISILIA
TDVVARGLDVPRITHVLNYDLPMDSESYVHRIGRTGRAGRSGTAILFARPRELRQLRFYE
RQTAGTIEMMDLPSAEELGKHRTAKLSVELAECVAGTNLEEMQKVISTMVEEQELTVEQL
AAALLFQRQRNKPLAPQADPAPRFERDRGERNDRGERGERRERGPRRANVEFDTFRLEVG
REHGTQVKDIVGAIANELSLDSGLIGQIRLQDAHTLVQLPKDMPNETLVKLKKINIRNRP
LEAERTSEVIPPRPRREGGRDGGGFRGNREGGREGGQRRDGGGYRGNREGGRSEGGRGGE
GHRGQRRDSAPRGDRSSAPRGDRRPRRDENFGNQ
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgtctaatagctgtgatttttccagcctcggtttacccgaagcgctgctgagtgccgta
acgtctatgggtttcactagccctactccgattcaggcacaatccattccattcatgttg
gaaggtaacgacatcttgggcgaagcccaaactggtaccggtaaaaccgctgcctttggt
ctgcctgctctagccggaattgacccacgtcagcgcgcttcacaaatgttagtactggcc
cctactcgtgaattggctatccaggttgcaactgcactggaagagttcgcggtaaacatc
aagggtctgcgtgttactaccctttacggtggtcaaccatacgcacctcagctgcgtgac
ctagagcgtggctctcaggtagtagttgctacccctggccgtttgatggatcacatccgt
cgcggtagcctcaagttagattctatccagtgctgtgtattggatgaagctgatgaaatg
ctgaacatgggtttcttagaagatatcgagtggatccttgagcacctgcctgagcagact
caaatggcgttgttctctgcaaccatgcctaaccagatccgtcgtatcgccgagcgcttc
ttgaaagatccgaagcacgttaagatcgctgctgataaagctcaaaaatctaacatcgtt
cagaaggcatggaaggtttccggcctaaacaagactaccgctctcgagcgtcttgctgaa
accttagattacgatgccatgatcgtgttcgtacgtactcgtaacgacaccatggaactg
gctaaccacctgaatactctgggctttaaagctgcagcgttaaacggtgacatgagccag
cagcaacgtgagcacactgttgctcagctgcacaaaggtaagatctccatcctgatcgca
accgacgttgttgctcgcggtctggacgttccacgtattactcacgtgttgaactacgat
ctaccaatggattcagaatcttacgtacaccgtattggccgtactggtcgtgctggccgt
agcggtactgcaatcctgtttgctcgtccacgtgaactgcgtcagttgcgcttctacgag
cgtcagactgctggcactatcgagatgatggacctgccttcagctgaagagctgggtaag
caccgtaccgctaagctgagcgttgagctggctgagtgtgttgctggtaccaacttggaa
gagatgcagaaagttatctctaccatggtggaagagcaagagttgactgttgagcaattg
gctgcagccttgctgttccaacgtcaacgtaacaagcctctggcaccacaagctgatcct
gcgcctcgtttcgagcgtgaccgtggtgagcgcaacgaccgtggtgagcgtggcgaacgc
cgtgagcgtggtccacgtcgtgctaacgttgaattcgataccttccgtctggaagtgggt
cgcgagcacggcactcaggttaaagatatcgttggcgctatcgcgaacgaactgtctctg
gacagcggcttgattggtcaaatccgcctgcaagatgcccacaccctggtgcagttgccg
aaagatatgcctaacgagactctggttaagctgaagaagatcaacattcgcaaccgtcca
ttggaagcggaacgtacttctgaagtaatcccaccgcgtcctcgccgtgaaggcggccgt
gacggtggcggtttccgtggcaaccgcgaaggcggccgtgaaggcggtcaacgtcgtgac
ggtggcggctaccgcggtaaccgtgaaggcggccgcagcgaaggtggtcgtggcggcgaa
ggtcatcgtggccagcgtcgtgatagcgctccacgcggcgaccgtagctctgctccacgt
ggcgatcgtcgtccacgtcgtgacgagaactttggtaaccagtaa
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