Ferrimonas lipolytica: HER31_02690
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Entry
HER31_02690 CDS
T06529
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
fes
Ferrimonas lipolytica
Brite
KEGG Orthology (KO) [BR:
fes00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fes03032
]
HER31_02690 (topA)
03400 DNA repair and recombination proteins [BR:
fes03400
]
HER31_02690 (topA)
Enzymes [BR:
fes01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
HER31_02690 (topA)
DNA replication proteins [BR:
fes03032
]
Prokaryotic type
DNA Topoisomerases
HER31_02690 (topA)
DNA repair and recombination proteins [BR:
fes03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
HER31_02690 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
DUF2399
DUF6324
Motif
Other DBs
NCBI-ProteinID:
QIZ75883
UniProt:
A0A6H1UBY7
LinkDB
All DBs
Position
547381..550038
Genome browser
AA seq
885 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGKDFVVKSSVGHIRDLPTSASQSTSRAAPAKTAAEVRKM
APEEKAKYKAKRDYQALITRMGINPKSDWDANYQILPGKEKVVKELQTLAEKADTIYLAT
DLDREGEAIAWHLQEVIGGEPERYRRVVFNEITKTAIQEAFAEPLHLNIDRVNAQQTRRF
LDRVVGFTVSPLLWKKLARGLSAGRVQSVAVRLVVEREREIRAFVPEEFWDIHADLNATT
AALRMEVTNFQGKTLKLTNKEQTDVVLKALQGAPFSITKREDKPTSSKPSAPYITSTLQQ
AASTRLGFGVKKTMTLAQRLYEAGHITYMRTDSTNLSKEAVETLRGFIGEEYGSNYLPET
PLRYGSKEGAQEAHEAIRPSDVNVKASTLSSMERDAQRLYELIWRQFVACQMVPAKYDAT
TITATAGDYDLKAKGRIMVFDGWTRAQPPVGRKGEEDKTLPAVKVGDSLELKQLDPKQHF
TKPVARFNEASLVKELEKRGIGRPSTYAAIIGTIQDRGYVRVENRRFFTEKMGEIVTDRL
VENFDELMSYDFTAGMEATLDKIAQGTLSWKGVLDEFYEDLTGNITKAELDELEGGMRPN
QMVETDIPCPTCERPMGIRTATTGVFLGCSGYSLPPKERCKTTINLTAGDEAEAVTDDQE
AKALITMRRCGKCGSTMDSYLVDETRKLYVCGNNPSCDGYEVEQGTFKIKGYDGPLIECD
RCGSDMELKDGRFGKYFACTDTNGADCKNTRKLLKSGEVAPPKEDPVPLPELPCEKSDAH
FILRDGAAGLFMAASTFPKSRETRAPKVAELKRFRDRISSKFYYLADAPEKDEDGNLYQV
KFSRKTKEQYVATEVDGKATGWIAKFDGKQWLEEQTKKSKVKAKK
NT seq
2658 nt
NT seq
+upstream
nt +downstream
nt
atgggaaaatctttggtaattgtggagtcgccagctaaggcgaagaccattaacaaatat
ctcggcaaagattttgtcgttaaatcttccgtgggtcatattcgtgacttgccgacttcg
gcgagtcaatcaacttcccgcgctgctccggcaaaaaccgcggctgaagttcgaaagatg
gcccctgaagagaaagccaagtataaagccaagcgcgactatcaggctttgatcacccgt
atggggattaacccgaaaagcgattgggatgctaactaccagatcttgccaggcaaagag
aaggtcgttaaagagttgcaaaccttggctgaaaaagccgataccatctatctcgcaacg
gatttggaccgcgaaggggaagccatcgcgtggcacttgcaagaagtgattggtggtgag
ccagagcgctaccgtcgagtggtgtttaacgaaatcaccaaaaccgcgattcaagaagcg
tttgctgagccactgcatctaaatatcgatcgtgtaaatgctcagcagacccgacgtttc
ctcgaccgagtggttggctttaccgtatcgccgctgctttggaagaaactagcccgtggt
ttgtctgctggtcgagtgcaatcggttgcggttcgcctagtggttgaacgtgagcgtgag
atccgtgcctttgtaccggaagagttctgggatattcacgcagatttgaacgctacgacc
gcggcattgcgaatggaagtgactaacttccaaggcaaaacgctgaagctgaccaataaa
gaacaaaccgatgttgtgctcaaggcactgcagggggcgccgtttagtatcactaaacgt
gaagataagcctacttcaagtaaaccttcagccccttacatcacttccaccttgcaacaa
gccgcaagcacacgtttgggctttggggtgaagaaaaccatgaccttggctcagcgtttg
tatgaagccggtcacatcacctatatgcgtaccgactccaccaatctgagtaaagaggca
gtagagacgctacgaggctttatcggcgaagagtatggcagcaactatctgccagaaacc
ccgctacgttacggctcgaaagagggcgctcaagaggcgcacgaagctatccgtccatcc
gatgtgaacgtaaaggcttccaccttgtcgagcatggagcgcgatgcgcaacgtttgtat
gagctgatttggcgtcaatttgtcgcttgtcagatggtaccggcgaagtacgatgccacc
accatcactgcgaccgctggtgattacgatctaaaagccaaaggccgcatcatggtgttt
gacggttggactcgtgctcagccgccggttggccgtaaaggcgaagaagataagactctg
ccagcagttaaagtgggtgatagccttgaactgaagcagctggatccgaagcagcacttc
accaaaccggttgctcgtttcaacgaagcgtcgttggtaaaagagcttgagaaacggggt
attggccgtccttcaacctacgctgccattatcggcaccattcaggatcgtggttacgtc
cgggtagagaaccgtcgtttcttcactgagaagatgggtgagatcgtcaccgatcgtttg
gttgaaaacttcgacgagttgatgagctacgatttcactgctggtatggaagcgacgctg
gataagattgctcaaggcacattaagctggaaaggtgtgctagacgagttctatgaagac
cttaccggtaacatcaccaaagcggagctggacgaactggaaggcggcatgcgtccaaac
cagatggttgagaccgacatcccttgtcctacctgcgaacggccgatgggcattcgtacc
gccaccactggggtgttcttaggttgtagtggttactcgttgccaccaaaggaacgctgt
aagaccaccatcaacctaaccgctggtgatgaagctgaagccgttaccgatgatcaagaa
gcgaaagcgttgatcaccatgcgtcgttgtggcaaatgtggcagcaccatggatagctac
ttggttgacgaaactcgcaagctgtatgtttgtggtaacaacccaagctgtgatggttac
gaggtagagcagggtaccttcaagattaagggctatgacggtccgctaattgagtgcgac
cgctgtggttccgatatggagctgaaagacggtcgctttggtaagtactttgcctgtact
gataccaatggtgctgattgtaaaaacactcgtaagttgctgaaaagcggtgaagtagca
cctccgaaggaagatccggtaccgctgcctgaattgccatgtgagaaatccgacgcgcac
tttattttacgcgacggtgctgcgggtctgtttatggctgcaagcaccttcccaaaaagc
cgtgaaacccgtgcccctaaagtggcagagctgaagcgtttccgtgatcgcatctcgtct
aagttctactatctggccgatgcgccggagaaggatgaagatggcaacctttaccaagta
aagtttagccgtaagactaaagagcaatacgttgcgactgaggttgacggtaaggctacg
ggttggatagcgaagttcgacggtaagcagtggctcgaagagcaaaccaagaagagcaag
gttaaagcgaagaaataa
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