Ferrimonas lipolytica: HER31_02960
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Entry
HER31_02960 CDS
T06529
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
fes
Ferrimonas lipolytica
Pathway
fes03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fes00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HER31_02960 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fes03019
]
HER31_02960 (pnp)
03016 Transfer RNA biogenesis [BR:
fes03016
]
HER31_02960 (pnp)
Enzymes [BR:
fes01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
HER31_02960 (pnp)
Messenger RNA biogenesis [BR:
fes03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HER31_02960 (pnp)
Transfer RNA biogenesis [BR:
fes03016
]
Prokaryotic type
tRNA degradation factors
HER31_02960 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
PNPase
RNase_PH_C
KH_1
KH_2
aRib
S1_RRP5
S1_2
Toprim
KH-I_KHDC4-BBP
KH_KhpA-B
OB_RRP5_4th
Motif
Other DBs
NCBI-ProteinID:
QIZ75930
UniProt:
A0A6H1UBH1
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All DBs
Position
606175..608277
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AA seq
700 aa
AA seq
DB search
MNPVIKSFPYGKHTVTLETGVIARQADAAVLASMGDTTVLVSVVGKKKVQPGQDFFPLTV
NYQEKTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPKGFMNEVQVVATVVSVE
PAVSPDVVAMIGTSAALAISGVPFNGPIGCARVGYKDGEYMLNPSREELAESKLDLVVAG
TEGAVLMVESEAEVLSEEEMLGAVVYGHQAQQAVINAINELKAEAGKPVWDWTAPVKNEE
LAAKVAEHAEQGLGDAYTTSDKVARVEKINAVKSATKEAILAADPDQDEQEIAGLLASLE
KKVVRTRIIAGEPRIDGRDTKMVRALSVLPGVLPRTHGSALFTRGETQALVAATLGTERD
GQIIDELVGERTDRFMLHYNFPPYCVGETGFIGSPKRREIGHGKLAKRGVQAVMPTAEEF
PYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLSDI
LGDEDHLGDMDFKVAGTSKGVTALQMDIKIEGITQEIMQIALKQANEARNHILSVMDQAM
PSHRSELSDHAPRITTLKINPDKIRDVIGKGGATIRALTEETGTTIEIEDDGTVKVASTD
GEAAKLAISKIEAITADVEEGRIYKGKVVRIVDFGAFVNILPGKDGLVHISQITEERVNN
VADHLSMGQEIDVKVVEVDRQGRIRLSMKDVAPKAAPAAE
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
gtgaatcctgtcattaagagctttccatacggcaagcacaccgtaaccctagaaacgggt
gttattgctcgtcaagccgacgctgccgttctggcaagcatgggcgacaccactgttttg
gtatctgttgttggtaagaaaaaagtacaaccaggccaagacttcttcccactaactgtt
aactaccaagagaaaacttacgctgcaggtaagattccaggtggtttctttaagcgtgaa
ggtcgtccaagcgaaggcgaaactctgactgcccgtctgattgaccgtcctatccgtcca
ctgttcccgaaaggcttcatgaacgaagtgcaggtagttgctactgtcgtttctgttgaa
cctgcggtatctccagacgttgttgccatgattggtacttctgcggctctggctatctct
ggtgttccattcaacggcccaatcggttgtgctcgcgttggttataaagacggcgaatac
atgctgaacccttctcgcgaagagctggctgagtcaaaactggatctggttgttgccggt
accgaaggcgccgttctgatggttgaatcagaagctgaagtattgtctgaagaagagatg
ctgggtgcggttgtatatggtcaccaagcacagcaggcggtaatcaacgccatcaacgaa
ctaaaagctgaagcgggcaagcctgtatgggattggactgcaccagttaaaaacgaagaa
ttggctgctaaggttgctgagcacgctgagcaaggcttaggcgacgcttacaccactagc
gacaaggttgctcgtgttgagaagatcaacgcggttaagagtgccactaaagaagctatt
ttggctgctgacccagaccaagacgagcaagagattgctggtttgttagcaagccttgag
aagaaagtagttcgtactcgcattattgctggcgagccacgtattgatggtcgtgatacc
aagatggtacgtgcgctgtctgtattgcctggcgtattgccacgtactcacggttctgcc
ttgttcacccgtggtgaaactcaggcgctggttgcagcgactttgggtacagagcgtgat
ggtcagatcattgatgagctggttggcgagcgtactgatcgctttatgctgcactacaac
ttccctccatactgtgtaggcgaaaccggtttcatcggttcacctaagcgtcgtgaaatc
ggccacggtaaattggcgaagcgcggtgttcaggcagtaatgcctactgctgaagaattc
ccgtacaccgttcgtgtggtttctgaaatcaccgaatctaacggttcttcttctatggcc
tcagtttgtggtacctctttggctctgatggacgctggtgttccaatcaaggcttctgta
gcgggtatcgcgatgggtctggttaaggaaggcgatgactttgtggttctgtctgacatc
ttgggtgacgaagatcacctaggtgacatggactttaaagtagctggtacctctaaaggt
gttactgcactgcagatggacatcaagattgaaggtatcactcaggagatcatgcagatc
gccctgaaacaggctaacgaagctcgtaaccacatcctgagcgttatggatcaagcgatg
ccttcgcatcgttctgagctatctgatcacgctcctcgtatcactactttgaagattaac
cctgataagatccgtgacgtaatcggtaaaggtggcgcgaccatccgtgctctgaccgaa
gagactggcaccactatcgaaatcgaagatgacggtaccgtaaaagtggcctctaccgat
ggcgaagctgccaaactggctatatctaagattgaagcgatcaccgctgatgttgaagaa
ggacgcatttacaagggtaaggttgttcgtatcgttgatttcggtgcgttcgttaacatc
ctgcctggtaaagatggtttggtacacatctctcagatcactgaagagcgcgtaaacaac
gttgccgatcacctgagcatgggccaagagatcgacgttaaggtagtggaagttgaccgc
caaggtcgtatccgcctatctatgaaagacgttgctcctaaagcggcaccagctgctgag
taa
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