Ferrimonas lipolytica: HER31_03225
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Entry
HER31_03225 CDS
T06529
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
fes
Ferrimonas lipolytica
Pathway
fes03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fes00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HER31_03225 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fes03400
]
HER31_03225 (mfd)
Enzymes [BR:
fes01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HER31_03225 (mfd)
DNA repair and recombination proteins [BR:
fes03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HER31_03225 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
Peripla_BP_4
YmdB
RecG_dom3_C
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QIZ75979
UniProt:
A0A6H1UBF6
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All DBs
Position
complement(675087..678539)
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AA seq
1150 aa
AA seq
DB search
MSRFSPLQPPQAGAGSKLKLTGLTGSALSLSADQLIRQNSDQLTLLITEDTPTALQLEQE
LNYLSHGDYPVLLFPDRETLPYDSFSPHQDIISQRLEALNALPSMRSGLVILPVSTALNR
LCPTDFVAGNVLSFKQGQTIDINALRSQLARAGYHTVEQVYEHGEFTVRGSIIDLFPMGA
EQPLRLDLFDDELESIRPFDIDSQRSAGTIEAISLLPAREFPTNQAGIDTFRTQYRQRFE
RISNEPESVYQQISKGILPAGVECYLPLFFANTSTAFDFLPEQVQLLSVGDIQHACERYL
KDAHNRFDNQRVDPLRPLLAPEELFLRSEELFAAMKPHGRIQLQAGTSEIAKEKQAQCQP
LTGIEANHQLKQPLTSLLEQQQGWQRTLFSVESEGRREALFELLRSTGIKPTRFDHWQQF
VSADEAVGVIVSPLENSVLLNQEKLALICEAQLFGNRVRQRSGRKSRGVSSDTLVKNLAE
LKIGQPVVHLKHGVGRYLGLELLDAGGMSAEFLMLEYATGSKLYVPVNALHLISRYSGAD
DDSAPLNKLGSEAWEKNRRKAAEKVRDVAAELLEIYAQREAKKGFAFKLDNGEYLRFSSG
FPFEETEDQANAIDAVISDMRQGQAMDRLVCGDVGFGKTEVAMRAAFVAVHGGKQVAVLV
PTTLLAQQHYDNFRDRFADWPVQIEVMSRFKTASEQKKAMQNLADGKIDIIIGTHKLLQS
DIKFPDLGLLIVDEEHRFGVRQKDQIKALRAEVDILTLTATPIPRTLNMAMSGMRDLSII
ATPPKRRLSVKTFVRPYEPELIREALLREILRGGQVYYLHNSVETIEECAKDLAALVPEA
RIGVAHGQMRERQLEQMMSEFHHGRFNLLVCTTIIETGIDIPTANTILIERADKFGLAQL
HQLRGRVGRSHHQAYAYLLTPSKRLSKDAQKRLEAIEQLEDLGAGFMLATQDLEIRGAGE
LLGDEQSGHIAKIGFSMYMDMLEQTVEALKAGQQPSLDSILADQTELELRLPALLPDDYI
PHVNTRLAIYKQIASCKTENEIIMAKVELVDRFGRLPTATENLLNTAKMKLRASALGIRR
IEANAKSGSFDFSEQTPIEATTLIKLLQSNPTTLKMDGPTKLRFVQEMENAEERFNAIDH
WLNLVSADLN
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgcttttctccactgcaaccgccacaagccggtgcaggcagcaaactaaaatta
actgggttaactggctcggcactgagtttaagtgctgatcagctgatccgccaaaacagc
gaccaacttaccctgttgatcactgaagacacccccacggcgctgcagctggagcaagag
cttaactatttaagccacggcgactacccggtattgctattccctgatcgcgaaaccctg
ccctacgatagcttttcgccccaccaagatatcatttcacaacgtcttgaagcgttgaat
gcgctgccaagcatgcgtagcggtttggtgattttaccggtatcaacggcccttaaccgc
ttatgcccaacggattttgtggccggtaacgtgctgtcgttcaaacagggacagaccatc
gacatcaacgccttgcgttctcagctggcgcgggcgggctaccataccgttgagcaggtt
tacgagcatggcgaatttaccgtccgtggctccatcatcgacctattcccgatgggggcc
gaacaaccattgcgcttagacctgtttgatgacgaactcgagtccattcgcccatttgat
atcgacagccaacgttctgcaggtaccatcgaagcaatatcgttgttacctgctcgggag
ttcccaaccaatcaagccggaatagatacctttcgcacccaataccgacaacgctttgag
cgcataagcaacgaaccggagtcggtgtatcaacagatcagcaaaggcattcttcctgct
ggggttgagtgttatctgccgctgttctttgccaacacttctaccgcctttgatttcttg
ccagagcaggtacaactgctgagtgttggcgacattcaacacgcttgtgagcgctaccta
aaagacgcccacaatcgcttcgacaaccaacgggttgatccactacgaccgttattggca
ccagaggaactatttctgcgcagcgaagagctatttgctgcaatgaaacctcatggtcga
attcagctgcaagccggcaccagtgaaatcgccaaagagaagcaagctcaatgtcagcca
ttaactggaattgaggcaaaccaccagcttaaacagccacttacaagcttgttagaacag
cagcaaggctggcaacgcaccctcttctcagtggagtcggaggggcgacgagaagcactg
tttgagttgctccgcagtactggcatcaagccgactcgttttgaccattggcagcagttt
gtcagcgctgatgaagccgtaggtgttatcgtcagcccactagaaaactcggtgctgctc
aaccaagaaaaactggcgttgatctgtgaagcgcagctgtttggcaaccgcgtccgtcag
cgcagtggccggaaatctcggggcgtcagctccgatactctggttaaaaacctagccgaa
ctaaagattggtcaaccagtggtgcacctaaagcacggtgtcggccgctacctagggctc
gaattacttgacgctggcggcatgagcgctgaattcctaatgctggaatacgccaccggc
agtaagctctacgttccggttaatgcgttgcatctgatcagccgctacagcggtgccgat
gatgacagcgcgccactcaacaaattgggcagcgaagcgtgggagaaaaaccgtcgcaaa
gccgccgagaaggttcgtgatgtcgcggccgagttgctggaaatctatgcccaacgggaa
gccaaaaaaggcttcgcctttaaactggataatggcgaatacctgcggttcagctccggt
ttcccatttgaagaaaccgaagatcaagccaacgccattgatgccgttatcagtgatatg
cgccaaggccaagcgatggaccgactggtttgtggtgacgttggtttcggaaaaaccgaa
gtcgcaatgcgcgccgcttttgttgccgtacacggtggcaaacaggtagcggtgttagta
cccactacattgcttgcgcaacagcactacgacaactttcgcgatcgctttgccgactgg
ccagtacagattgaggtgatgtcgcgtttcaaaactgcctcagaacaaaagaaagcgatg
cagaacctcgccgacggtaagattgatatcatcattggcacccataagttgttgcaaagc
gacatcaaattcccagatttagggctgctgattgtcgatgaagagcaccgctttggggta
cgccaaaaagatcaaattaaggcgctgcgagccgaggttgatatcctcactcttaccgcc
accccgatcccgcgaactctcaatatggcgatgtcgggcatgcgagatctgtcgataatc
gccaccccaccgaaacgtcgattatcggttaagacatttgtccgcccgtatgagccagag
ttgatccgcgaagcactgctacgggagatcctccgtggtggccaagtctattaccttcat
aacagcgtcgaaaccattgaagagtgcgccaaagaccttgccgcattagtgccagaagct
cgtatcggcgttgcccatgggcagatgcgtgaacgtcaacttgagcagatgatgagcgaa
ttccaccacggtcgcttcaacctactggtgtgtaccaccatcatcgaaaccggcatcgac
atccccactgccaacaccatcctcatcgagcgtgccgataagttcggtctagcgcagtta
caccaactccgaggcagggtaggacgctctcatcaccaggcctatgcctacttgctgaca
ccgtcaaaacggcttagtaaagatgcgcagaaacgattggaagcgattgagcaactggaa
gacttaggggccgggtttatgctggcaacccaggatctggagatccgtggtgccggtgaa
ttgctgggtgacgaacaaagtggccacatcgccaagatcggttttagcatgtatatggat
atgctcgagcaaactgtcgaggcactaaaagccggccagcaaccgtcactggactcgatt
ttggccgaccaaaccgaactcgagcttcgcctaccggccttactgcctgacgattacatc
cctcacgtcaacacgcgtctagcgatctacaaacagattgcatcgtgtaaaaccgaaaat
gagatcatcatggcaaaggtagagttggtcgaccgctttggccgtctgcctactgcaacc
gaaaacctactcaataccgctaagatgaagctgcgcgccagcgccctaggcatccgccgc
attgaagccaatgccaagtccggcagctttgatttcagtgaacaaacgccgatcgaagca
accacgttaattaaattgctgcagtcgaatccaactacccttaaaatggatggtccaaca
aagctgcgatttgtccaagagatggaaaacgcagaagaacgtttcaacgccatcgaccac
tggctcaacttagtatctgcggatcttaactga
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