Ferrimonas lipolytica: HER31_03555
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Entry
HER31_03555 CDS
T06529
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
fes
Ferrimonas lipolytica
Pathway
fes03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fes00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HER31_03555 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fes03019
]
HER31_03555 (rne)
03009 Ribosome biogenesis [BR:
fes03009
]
HER31_03555 (rne)
Enzymes [BR:
fes01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
HER31_03555 (rne)
Messenger RNA biogenesis [BR:
fes03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HER31_03555 (rne)
Ribosome biogenesis [BR:
fes03009
]
Prokaryotic type
rRNA processing factors
HER31_03555 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QIZ76041
UniProt:
A0A6H1UAG6
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All DBs
Position
complement(752176..755523)
Genome browser
AA seq
1115 aa
AA seq
DB search
MKRMLINATQSEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKVTRVEPSLEAAFVDY
GADRHGFLPLKEIAREYFINPSQKGRPSVKEAIKEGQEVIIQVDKEERGTKGAALTTFIS
LAGSYLVLMPNNPRAGGISRRIEGDERSDLKEALSKLDVPQGMGLIVRTAGVGKAAEELA
DDLNVLLHHWNSIKTAADSKPAPLLIHQESNVIVRAIRDYLRTDIGEILIDHQKIFEKAR
DHIALVRPDAVSKLKLYQSEVPLFTHYQIETQIESAFQREVRLPSGGSIVIDPTEALTAV
DINSARATKGGDIEETALQTNLEAADEIARQLRLRDLGGLVVIDFIDMGPVRHQREVENR
LRDAVRQDRARVQLGRISRFGLLEMSRQRLRPSLGESAAHLCPRCNGQGSIRGTESLALS
ILRLMEEEAIKEHTSQIEAQVPTDVAAYLLNEKRKAIRIIEQRHKVEVYVIPHPHMETPA
YKVVRHRKDDTIAEASYTLVERPEAKLYEPRKHERAQLDKPAVSALSPAPVTAPAPAAAP
TKAEARPERKPKREKPKRAPRQERKPEPQPSLFARIGAAIKSLFGGEEEAKPEPKGRRND
NRRGRNNDRKERGERGERNDRNRRNRNRNDKRDDSEQQGEAKNERRRNRRDRNERTERDD
NRRNEQQRGRNNDTAVETSVKPDDKRRNERDETRRNERDEARRTERNERRNKQKRDAAPV
EIAAADAPAKQEARPERTERAERTERTEQPKRERRPRRQMERSVRLAKEQTETAAIAATP
VEPVAAPIAAPAVESKAPTPAPVVEEQAVEAAPAVTKAEEKTEINLTDNERQAHRRSRRS
PRHLRAAGQRRRRNRDEETTQTDPVNARYPEQTENQAQQIPMDLQPAAPVAAAKPAPAPA
PVAEAKPAPAPAPVAEAKPAPAPAPVAEAKPAPAPAPVAEAKPAPAPAPVAEAKPAPAPA
PVAEAKPAPAPAPVAAAKPAPAPAPVAEAKPAPAPAPVAEAKPAPAPAPVAEAKPAPAPA
PAAAAKPAPAPAPVAEAKPAPAPAPVAEAKPTTPKRGLLDNSRGVSAKMASPKSVDSEVK
KIDVTVPEFEAKKNDFAHNRYASMVNSTMTRPEDK
NT seq
3348 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgatcaacgcaactcaatctgaagagttgcgcgtagcgttggtcgat
ggccaacgcttatatgatttggacatcgaaagcccaggtcatgaacagaaaaaagctaac
atttacaagggtaaagttacccgagtagaaccttctcttgaagccgcttttgtcgattac
ggcgctgaccgtcacggctttttgccgctcaaagagattgctcgcgaatacttcatcaac
ccatctcaaaaaggtcgtccttcggtaaaagaagcgattaaagagggtcaggaagtaatc
attcaggttgataaggaagagcgtggcaccaaaggtgcagccctaaccacctttatcagc
ttggccggttcttacttggtattgatgccaaataaccctcgcgccggtggcatctcacgc
cgcatcgaaggcgacgagcgtagcgacctaaaagaagcgttgtctaagcttgacgtaccg
caaggtatgggcctaattgtccgcacagctggtgttggcaaagcagccgaagagctagca
gacgatcttaacgtactgctgcaccactggaactcaatcaaaactgcggcagactctaag
cctgcgccgctacttattcaccaagagtcaaacgtaattgttcgcgctattcgtgactac
ttgcgtactgacatcggtgaaatactgattgaccatcagaaaatcttcgaaaaagcacga
gatcacatcgcgctagtgcgtcctgatgcagtgtctaagctgaaactataccagagcgaa
gtaccactatttacccattaccagattgaaactcagattgagtctgcgttccaacgtgaa
gtgcgtttgccttctggtggctccatcgttatcgacccgaccgaagcattgaccgcagtg
gatattaactccgctcgtgcaaccaaaggtggcgatattgaagaaaccgcgctgcaaacc
aacctagaagcagccgacgaaattgcccgtcagttacgtctacgtgacttgggtggcttg
gtcgttatcgattttatcgatatgggcccggtacgtcatcaacgtgaagtagaaaaccgt
ctgcgtgatgctgttcgtcaagatcgtgctcgcgttcagcttggtcgcatctcgcgcttt
ggcctgcttgaaatgtcccgtcagcgcctacgcccatcgttgggtgaatccgcggcacac
ctatgtcctcgctgtaatggccaaggctctatccgtggtactgaatcattagcgctatct
atcctgcgtctgatggaagaggaagcgattaaagagcacacttcgcagattgaagctcag
gttccaactgatgttgccgcttacctgctgaacgaaaagcgcaaggcaattcgtatcatc
gaacagcgtcacaaggttgaagtgtatgtgatcccacatccacacatggaaaccccagct
tataaagtggttcgtcatcgtaaagatgacaccattgctgaagctagctacaccttagtg
gagcgtcctgaagctaaactgtacgagcctcgtaaacacgaacgtgctcaattggataag
ccagcggttagcgctctgagcccagcgccagttactgcccctgccccagctgctgcacca
acgaaagctgaagctcgcccagaacgaaagcctaagcgtgaaaagcctaagcgcgcgcca
cgccaagagcgcaagccggagccacaaccgagcctgtttgcccgtattggtgcagcaatt
aagagcctattcggcggcgaagaggaagcaaagccggagccaaaaggacgtcgtaacgac
aaccgccgtggtcgtaacaacgaccgcaaagaacgtggtgaacgtggtgaacgtaacgat
cgcaatcgtcgcaaccgtaaccgcaacgacaagcgtgacgacagcgaacagcaaggtgaa
gcgaaaaacgaacgtcgccgcaaccgccgcgaccgcaacgaacgcaccgaacgcgatgac
aaccgtcgcaacgagcaacaacgcggccgtaacaacgacactgctgttgaaacaagcgtg
aagcctgatgacaagcgtcgcaacgaacgtgacgaaacccgtcgcaacgaacgcgatgaa
gcacgccgtactgagcgtaacgagcgtcgtaacaaacagaaacgcgatgccgcaccggta
gaaatagcagccgctgatgcaccagccaagcaagaagcccgtcctgagcgtaccgaacgt
gcagaacgtaccgaacgcactgagcagcctaagcgtgaacgtcgtccacgtcgtcagatg
gagcggtctgtacgtcttgctaaagagcaaaccgaaaccgctgcaatagctgcaacgccg
gtagagccagtagccgcaccaattgccgctccagcggttgaatctaaggctccgactcca
gcacctgtggtagaagagcaagctgttgaagctgcaccagcagtaacaaaagcagaagag
aaaactgagatcaacctgaccgacaacgagcgtcaagctcaccgtcgttcccgccgcagc
ccgcgtcacttacgtgccgctggtcaacgtcgccgtcgtaaccgcgatgaggaaacaact
cagactgatccagttaatgctcgctaccctgagcaaactgaaaatcaagctcaacagatc
ccaatggatctacagccagctgctccagtagctgcagctaagcctgctcctgcaccggct
ccagtagctgaagctaagcctgctcctgcaccagctcctgtagctgaagctaagcctgct
cctgcaccggctccagtagctgaagctaagcctgctcctgcaccggctccagttgctgaa
gctaagcctgctcctgcaccagctccagtagctgaagctaagcctgctcctgcaccggct
cctgtagctgaagctaagcctgctcctgcaccggctccagtagctgcagctaagcctgct
cctgcaccggctccagtagctgaagctaagcctgctcctgcaccggctccagtagctgaa
gctaagcctgctcctgcaccggctccagtagctgaagctaagcctgctcctgcaccggct
ccagcagctgcagctaagcctgctcctgcaccggctccagtagctgaagctaagcctgct
cctgcaccggctccagtagctgaagctaagcctacgactccaaagcgcggcctacttgat
aactcccgaggcgttagcgctaagatggcatcaccaaagagcgtcgactctgaagtgaaa
aaaatcgatgtaactgtgccggagtttgaagcaaagaagaacgactttgctcataaccgc
tacgccagcatggtgaactcaacgatgactcgtccagaagacaagtaa
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