Ferrimonas lipolytica: HER31_11110
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Entry
HER31_11110 CDS
T06529
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
fes
Ferrimonas lipolytica
Pathway
fes03030
DNA replication
fes03430
Mismatch repair
fes03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
fes00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HER31_11110 (dnaE)
03430 Mismatch repair
HER31_11110 (dnaE)
03440 Homologous recombination
HER31_11110 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fes03032
]
HER31_11110 (dnaE)
03400 DNA repair and recombination proteins [BR:
fes03400
]
HER31_11110 (dnaE)
Enzymes [BR:
fes01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HER31_11110 (dnaE)
DNA replication proteins [BR:
fes03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HER31_11110 (dnaE)
DNA repair and recombination proteins [BR:
fes03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HER31_11110 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
QIZ77380
UniProt:
A0A6H1UFK2
LinkDB
All DBs
Position
complement(2426663..2430160)
Genome browser
AA seq
1165 aa
AA seq
DB search
MTDPKFVHLRVHTDFSMVDGLPKVKPLLARASELGMAAIAVTDMTNLCGLVKFYGGAHGA
GIKPIIGADFWVTTPELGDEQFRITALATNNKGYANITDLISEAYLRGHVNNRPVLDKAW
LAKHSEGVIILSGGKDGDVGKALVKGNFAMAAELAKFYQQHFADHYYLELLRTGRADEET
YLHAALDFAAEQELPLVATNEVVFLDKANFSNHEIRVCIHDGFPLDDARRPRLYSEQQYL
RSEDEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPDFPTGDLKIEDYLVKVSEDGL
EERLEFLFPDPEKRAEVRGEYDERLKIELEVVNNMGFPGYFLIVMEFIQWSKDNNIPVGP
GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHTAE
LYGRDAVSQIITFGTLAAKAAVRDVGRVLGHPFGFVNRITSLIPGDPGMNLAKAFDIEPA
LTELYDRDEEVKNLIDIARALEGTTRNAGKHAGGVVIAPTKITDFAPLYCDAEGGNPVTQ
FDKNDVETAGLVKFDFLGLRTLTIIQWALDMLNPALESKGKAPVRIESISLTDQRCFDLL
QRSETTAVFQLESRGMKELISRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE
VSYPDATWQHDSLKVILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM
AKQRATFEEGAVQNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWMKTHYPS
YFMAAVMSADMDNTEKVVTLVDECSRMGIPLLPPDVNQGLYKFNVNPQEQIVYGIGAIKG
VGEGPVDEILAAREQGGNFIDLFDFCDRVDLKKVNRRTIEKLIMAGALDNLGPRLADGNP
HRACLMATLEEAIKSAAQNARNAAQGMDDLFGSLTPEPENAHHSFVQVPPFADQEWLKGE
KDTLGLYLTGHPINQFLKEFKRMGTIRIRDAAPTGRGRTAKVAGLVIASRVMITKKGSKM
GIVTLDDGSDRMDMTLFAEGVEKYGDLIGTDRIIVVEGEVSFDHFNGGNKLSAREVMSIA
QAREKHAKAVVLTLNQSVAQPELLTQLKTLLSEHGNGGCPVQIHYQREDAHGVLQLGDGY
RILPEDELLLSLRKLLGQQQVVVTF
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atgactgatcctaagttcgttcacctgcgggtgcataccgatttctccatggttgatggc
ttgccgaaggttaagccgttgctagcccgtgcttcagagctgggcatggctgccattgcg
gtaactgatatgaccaacctttgcggtttggttaagttctatggtggtgcccacggagca
gggatcaaaccaattattggcgccgatttttgggtaactactccagagcttggcgacgaa
cagtttcgtatcaccgcgttagcaaccaataataaaggctacgcgaacatcaccgatctg
atcagcgaagcttatctgcgtggccacgtaaataaccgtcctgtattggataaggcgtgg
ttggctaaacattcggaaggggtaattatcctttctggtggtaaagatggcgatgtgggt
aaggcgctggttaaaggtaattttgccatggctgcagagctggcaaagttttaccagcaa
cattttgccgatcattactatcttgagctgctgcgtaccggtcgtgctgacgaagaaacc
tacttgcatgcagcgctcgattttgccgccgagcaggaactgccactggttgccactaac
gaagtagtgtttctcgataaggcgaacttttccaaccacgaaattcgagtttgtattcac
gatggcttcccgttggacgatgctcgtcggccacgtctctactcagaacaacaatatctg
cgtagtgaagatgagatgtgcgagctgttcgccgacatcccagaagcgctggaaaacagc
gttgagatcgccaagcgttgtaacgttactgttcgcttaggggagtacttcctgcctgat
tttccgaccggtgatctcaagattgaagattatttggttaaggtttctgaagacggctta
gaagagcgtttagagtttctattcccggatccggaaaaacgagctgaggttcgtggcgaa
tacgatgagcgcctaaagattgagttggaagtagttaacaacatggggttcccaggctac
ttcttgatcgtaatggagtttatccagtggtctaaagataacaacatccccgttggccca
gggcgaggttctggtgccggctccttggtggcatacgcgcttaaaattaccgatctggac
ccattggaatacgatctgctattcgaacgtttcttgaatccagagcgggtatcaatgccc
gattttgatgtcgatttctgtatggatcgccgtgatgaggttatcgatcacaccgcagaa
ttgtacggccgtgatgcggtttcgcagatcattacctttggtaccttggcggccaaggcg
gcggttcgcgatgtcggtcgagtacttggtcatccgtttggcttcgtaaaccggattaca
tcgttgatcccgggcgaccctggtatgaatctagccaaggcgttcgatatcgaacctgcg
ctcactgagctatatgatcgtgatgaagaggtgaagaacctcatcgacattgcgcgagcc
cttgaaggtaccacccgtaacgctggtaagcacgccggtggcgtggttatcgctccaacc
aagatcaccgactttgccccactttattgcgatgctgaaggtggcaacccagtaacccag
tttgataagaacgacgttgaaactgccggtctggttaagttcgacttcttgggtttgcgg
acgttaaccattatccagtgggcattggatatgctgaaccccgcgctcgagtccaaaggt
aaagcgccggttcgcattgaaagcatcagcctaactgatcaacgctgtttcgatctactg
caacgttctgaaaccactgctgtattccagctggaatcacgagggatgaaggagctaatt
agccgtctgaagcccgactgttttgaagacatgatcgccttggtggcattgttccgtccc
ggaccgttgcaatcgggcatggtagataactttattgaccgtaagcacggtcgagaagag
gtctcttacccagatgccacctggcagcacgattcgctcaaagtcattctagagccaacc
tacggtattattctctatcaagagcaggtgatgcagatcgctcaggtactctcaggttac
acccttggtggcgctgatatgctgcgtcgagccatgggtaagaagaagcctgaagagatg
gcaaagcagcgcgcgaccttcgaagagggggcggtgcaaaacggcgtcgacggtgagttg
gcgatgaagatcttcgacttggtggaaaagtttgccggttacggctttaacaaatcccac
tctgctgcctacgcgttggtgtcctaccagacgctgtggatgaagacccattacccgagc
tactttatggcggcggtgatgtcagcggatatggacaacaccgagaaggtggttacctta
gttgatgagtgcagccgcatggggatcccactgctgccgccagacgttaaccaaggcctg
tataagtttaatgttaatccacaagagcagatcgtctacggaattggtgccatcaaaggg
gttggtgaaggtccagttgatgagatcttagcagctcgagagcagggcggtaactttatc
gatctgttcgacttctgcgaccgagttgaccttaaaaaggtcaaccgccgtactatcgaa
aagctgatcatggcaggcgctttggacaacttaggcccacgcttggcagacggaaaccct
caccgtgcctgtttaatggcgacgctggaagaggcgatcaagtcggcggcgcaaaatgcc
cgcaacgccgcccaagggatggatgacttgttcggctcgttgacgcctgagccagaaaac
gcgcaccactcctttgtccaagtgccgccgtttgcggatcaagagtggctgaaaggcgaa
aaagataccctaggcttgtacctcactgggcatcccattaaccagttcctgaaagagttt
aaacggatgggtaccatccgcatccgcgatgcagcgccgaccggccgtggccgtactgcc
aaggttgccggtttagtgattgcatcacgggtaatgatcactaagaaaggttctaaaatg
ggcattgtcaccctcgatgatggctcagaccgtatggatatgactctattcgctgaagga
gttgaaaagtatggtgatctcatcggaacagaccgaattattgtggtagaaggagaggtc
agctttgatcatttcaatgggggcaataaactgtccgcccgtgaagtgatgagtattgct
caggcgcgggagaagcacgccaaagccgtagtgctaacactcaaccaaagcgttgctcag
ccagagttgttgacccagttaaaaacgctgcttagcgagcatggtaatggtggttgccca
gtgcagatccattatcagcgagaggacgcccatggggtgttacagttgggggatggttat
cgtatcctgccagaagatgaattattgttgtcactgcgcaaattgcttggccaacagcag
gtcgtggtgaccttttag
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