Ferrimonas lipolytica: HER31_11590
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Entry
HER31_11590 CDS
T06529
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
fes
Ferrimonas lipolytica
Pathway
fes03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fes00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HER31_11590
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fes03019
]
HER31_11590
Enzymes [BR:
fes01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HER31_11590
Messenger RNA biogenesis [BR:
fes03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HER31_11590
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UvrD-helicase
AAA_22
CMS1
SNF2-rel_dom
DUF6047
Motif
Other DBs
NCBI-ProteinID:
QIZ78889
UniProt:
A0A6H1UJT7
LinkDB
All DBs
Position
2541757..2543205
Genome browser
AA seq
482 aa
AA seq
DB search
MQFTDLGLAKPILDAVTAQGYTVPTPIQAQAIPAVMQGQDVMAAAQTGTGKTAGFTLPIL
HLLNNGQRARSNKCRALVLTPTRELAAQVEENVNAYAKNTPLRSAVVFGGVKINPQLQKL
RSGVDVLVATPGRLLDLYQQNAIRFDQLEVLVLDEADRMLDMGFIRDIKKIINLLPAKRQ
NLLFSATFSDEIRELAKGLVNNPVEISVTPRNATAKSVEQIVHPVDKKRKPLLLAQLIGE
NNWQQVLVFTRTKHGANKLTKYLQEFSITAAAIHGNKSQGARTRALAEFKSGDVRALVAT
DIAARGLDIDQLPQVVNYELPQVAEDYVHRIGRTGRAGATGHAISLVCADEWEQMVAIEQ
LTQKHLEREMVAGFEPQNPLDDSKPIRPLKAKKPKKPKKPAGNEHNSDGTETKAAAPRRR
KPQANRNGQGAHSGDAKPTGGQRRGGGGQRTGASSGGEGQRNGNRNSGGRSQGSGNRSRR
SD
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgcagtttactgatctcggtttagctaaaccgatcctcgatgccgttaccgctcagggc
tataccgtccctactcctattcaggcccaagcaatacctgcagtaatgcaaggccaagat
gtgatggcggcagcgcagacaggtacaggtaaaaccgcaggattcacccttccgatcctg
cacctgcttaataacggtcaacgcgctcgcagcaacaagtgtcgcgcgttggtgttaacc
ccaacacgggagttagccgcacaggtagaagagaatgttaacgcttacgccaagaacacg
ccgctgcgctctgcagtggtatttggtggtgtaaagatcaacccgcagctgcaaaaattg
cgcagcggtgtggatgtattggtcgcaactccaggtcgccttctcgacttgtaccaacaa
aatgctattcgttttgatcagctggaagtgctggtactggacgaagcggaccgtatgctc
gatatgggctttatccgcgacatcaagaagatcattaacttgttgcctgcaaagcgtcag
aaccttctgttctccgccaccttctccgacgagatccgcgagctagccaaaggcttagta
aacaatccggttgagatctcagtgacgccacgtaacgccacagccaaaagcgtcgagcag
attgtccacccggtggataagaagcgtaagccgcttctgctggcacagctgattggcgaa
aataactggcaacaggtgttggtgtttacccgtaccaagcacggtgctaataagttaacc
aagtacctgcaagagttcagcattaccgctgccgctatccacggcaataaaagccaaggt
gctcgtactcgcgctctggctgagttcaaatccggtgatgtacgtgccttggttgctacc
gatatcgccgcccgtggcctcgatatcgaccaactgccacaagtcgtaaactacgagcta
ccacaggtggcagaagactatgtacaccgcattggccgaactggccgtgctggtgcaacc
ggtcatgctatctcactggtgtgtgccgacgagtgggagcaaatggttgccattgaacag
ctgactcaaaagcacctagagcgtgaaatggtggctggatttgaaccacaaaacccgttg
gatgactctaagccgattcgcccgcttaaggcaaagaagccgaagaaaccaaagaagcca
gctggcaatgaacacaacagcgatggcactgagaccaaagctgcagcaccacgccgtcgc
aagccacaagccaatcgaaatggccaaggtgctcacagtggcgatgctaaaccgactggc
ggtcaacgtcgtggcggtggcggtcaacgtaccggtgcgagcagcggtggcgaaggccaa
cgtaatggtaaccgcaactccggcggtcgcagtcagggtagcggcaaccgcagccgtcgc
agcgattaa
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