Ferrimonas lipolytica: HER31_12690
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Entry
HER31_12690 CDS
T06529
Symbol
thpR
Name
(GenBank) RNA 2',3'-cyclic phosphodiesterase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
fes
Ferrimonas lipolytica
Brite
KEGG Orthology (KO) [BR:
fes00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
fes03016
]
HER31_12690 (thpR)
Enzymes [BR:
fes01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
HER31_12690 (thpR)
Transfer RNA biogenesis [BR:
fes03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
HER31_12690 (thpR)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
Motif
Other DBs
NCBI-ProteinID:
QIZ77677
UniProt:
A0A6H1UEZ6
LinkDB
All DBs
Position
2770141..2770662
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AA seq
173 aa
AA seq
DB search
MANRLFFAVPVPRSQQLPLLRLQTQLEGAGRPVLASNFHITLAFLGNVCAAAQQQLLQRW
QGLSLPPCQLSLNQLQLWPKAQVLALTSNECPTPLYQLAGALQRDAAKHGLHQSQHGFRP
HLTLFRGAQQSPLATQHLQQPILINCNEVQLMISEQTPAGVSYQPIKRWQCYE
NT seq
522 nt
NT seq
+upstream
nt +downstream
nt
atggctaaccgtttgttcttcgctgtgccggttccgcgcagccaacagttaccgctattg
cggttacaaacccagctggagggcgctggccggccggttttagccagtaacttccatatt
actttggcgtttcttggtaatgtctgcgccgcagcgcaacaacagctcctacaacggtgg
caagggttatccctaccaccgtgccaactgtcgttgaatcaactgcagctatggcccaag
gcccaagtgcttgcgctaaccagcaatgagtgtccaacgccgttatatcaacttgctggg
gcattacaacgagacgcagccaaacacggtttacaccaaagtcagcacggctttcggcca
catctgaccctgtttcgaggggcgcaacaatcgccactggcaacgcaacatctccaacaa
cccatccttatcaactgcaacgaagtgcagttgatgatctccgaacaaactccagcagga
gtgagttaccaaccaataaaacggtggcagtgttatgagtga
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