Ferrimonas lipolytica: HER31_12815
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Entry
HER31_12815 CDS
T06529
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
fes
Ferrimonas lipolytica
Pathway
fes03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fes00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HER31_12815
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fes03019
]
HER31_12815
03400 DNA repair and recombination proteins [BR:
fes03400
]
HER31_12815
Enzymes [BR:
fes01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HER31_12815
Messenger RNA biogenesis [BR:
fes03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HER31_12815
DNA repair and recombination proteins [BR:
fes03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HER31_12815
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
SNF2-rel_dom
Rhodanese
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QIZ77700
UniProt:
A0A6H1UGH3
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All DBs
Position
2792228..2794138
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AA seq
636 aa
AA seq
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MPHSLLQQHFGFSEFRPGQQQTIEHLLAGRSAAAIFPTGSGKSLCYQLPALALPNLTLVI
SPLLALMQDQLAFLHSKGIPAATIDSTQSYEQSQQVMRQVRDGEIKILMISVERLKNERF
RNFIGQIPISLLVVDEAHCISEWGHNFRPDYLKLPHYRQSLNIERVLLLTATATPQVIDD
MAAKFAIDPSCITATGFYRCNLDLGVEAVSPEQRLPYLQQHLDSRREQPAIVYVTQQQSA
EQVATALKQTGHHVAAYHAGLEHPLRMRIQQQFMAGELAVIVATIAFGMGVDKADIRHVI
HYDLPKSIENYSQEIGRAGRDGQRSECLVLANQANRSVLENFIYGDTPEQDSIARVLTEV
SQAGPQWELMANQLSASSNVRPLPLRTLLVYLEMAGLIESKYSYYAEVKFKLKVTETELA
NRFQGERKHFVEALFASCQKARIWWQVDFEALYQGYGAERSRALTALDYFEQQGLIELQT
KQMTEVYQVQQPLPPLEPVLQQLVQQFASKEHSEVGRIEQMLALLQTPECLSHALADYFG
DSAAPQQCGHCSACRGDVATLAAVATPPMASPEQIAQWLAPLQQALVQHGWAYTPRIGAR
FLTGLPSPWLTKVKARQMPGYGQQEQQPFAQLEAQC
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgcctcactccctgttgcagcaacactttggctttagcgaatttcgtcctggccaacaa
caaaccattgagcatctactagccggccgcagtgccgccgctatctttcctaccggctca
ggcaaatcactgtgttaccaattaccggcgttggcgctgccaaacctcaccttggtgatc
tcgccattactggcgttgatgcaagatcagttggcctttttgcacagcaaagggatccct
gccgccaccatcgactcaacccaaagctacgaacagagccagcaggtgatgcgtcaggta
cgtgacggcgagattaaaatcttgatgatctcggtcgagcggctcaagaacgaacgtttt
cgtaatttcatcggccagatcccaatcagcttattggtggtcgacgaagcgcactgcatc
tccgaatggggccataacttccgtcccgactatctcaagctgccgcactaccgccaaagc
cttaatatcgagcgagtattactgcttacagctactgctacgccacaggtaattgacgat
atggcggccaagttcgccattgaccccagctgcatcaccgctaccggcttttatcgctgt
aacctcgatttaggtgttgaagcggttagccctgagcagcgtcttccgtacctgcaacag
catctagatagccgccgagaacaaccggcaatcgtctacgttacgcagcaacaaagtgct
gaacaggttgccactgcacttaaacaaaccggccaccatgttgccgcttaccatgcgggg
ctagaacacccgctgcgaatgcgtattcagcaacaatttatggccggcgagctggcggtt
attgtggcaactattgcctttggtatgggggtcgataaggcagatattcgccacgttatc
cattacgatctgcccaagtcgatagaaaactacagccaagagatcggccgcgctggccgt
gatggtcaacgttcagagtgcctagtgctggccaaccaagccaaccgctcagtactggaa
aactttatctacggcgatactccagaacaagacagcattgctcgggtcctcaccgaggta
agccaagctgggccgcaatgggagctgatggccaaccaactttccgctagcagcaacgtt
cggccactgccactgcgcaccctgttggtgtacctcgagatggcggggctgatcgaatca
aaatacagctattatgccgaagtgaagttcaagcttaaggttactgaaaccgagctagcc
aaccgtttccaaggcgagcgcaaacactttgtcgaagcgctgttcgccagctgccaaaaa
gcacggatctggtggcaggtcgacttcgaggcgctgtaccaaggttacggcgctgagcgc
agtcgtgccctaaccgcattggattactttgaacaacaaggcttgatcgaactgcaaacc
aaacagatgaccgaggtttatcaagtacaacaacctctgccaccacttgagcctgtattg
caacaactggtgcagcagtttgccagtaaggagcacagcgaggtggggcggattgaacag
atgctcgccttgttgcagaccccagagtgtttgagccacgccttagccgactactttggc
gatagtgccgcgccgcagcagtgtggccactgctctgcgtgtcgcggcgacgttgccacc
ttggctgctgtagccacaccgccaatggcaagccccgagcagatagcccaatggttggca
ccactacagcaggcattagtgcaacacggctgggcttataccccgcgtatcggagctcgc
tttcttaccggcttgccaagcccatggttaaccaaggttaaggcacgtcaaatgccaggc
tacggccaacaggagcagcaaccgttcgcccaactcgaagcgcagtgttaa
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