Ferrimonas lipolytica: HER31_13150
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Entry
HER31_13150 CDS
T06529
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
fes
Ferrimonas lipolytica
Pathway
fes02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
fes00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HER31_13150 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fes03021
]
HER31_13150 (rpoD)
Transcription machinery [BR:
fes03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HER31_13150 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
QIZ77761
UniProt:
A0A6H1UFA1
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All DBs
Position
2869451..2871289
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AA seq
612 aa
AA seq
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MISMDQTPQSQLKLLVAKGKEQGYLTYAEVNDHLPADMVDSDQIEDIIQMINDMGIQVFE
SAPDKDELMMSEDNTDEDAAEAAAAALASVEGELGRTTDPVRMYMREMGTVELLTREGEI
VIAKRIEDGINQVQCSIAEYPAAISYLLEQWDRYVAEEIRLTDIISGFITEEDEAPTATH
VGSELPQEELDDEDDDSEEDDEEEEEGNTGPCPEQAKEKFDALREHYSLAMTAMAEHGSD
SLEVAMIVTKLSELFKEFRLIPKQFDGLVRSMRSMMDRVRVQERLIMKTCVEQAKMPKKN
FMKVFAGNEANETWLDAEIAAGKSYSAALTACRTDLQRSVAKLEVIQGETGLSISKIKDI
NRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEY
RRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPE
ELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLAQPVDSATSESLK
MATNEVLAGLTAREAKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHP
SRSEILKSFLDE
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgatatcaatggatcaaactccgcagtcacaacttaagctcctggtcgccaaaggcaaa
gaacagggctatctgacttacgccgaggtgaacgatcacctgccggccgatatggtcgat
tctgaccagatcgaagatattatccagatgattaacgacatgggtatccaagtctttgaa
tccgctccggataaagacgaactcatgatgtcggaagacaacaccgacgaagatgcagct
gaagctgccgcagccgcactggctagtgtcgaaggtgaacttggtcgcaccactgatccg
gtccgcatgtacatgcgtgaaatgggtacagtagagctactaactcgtgaaggcgaaatc
gtaatcgcgaagcgcattgaagatggcatcaaccaggtgcaatgttcaatcgccgagtac
cctgccgctatcagctacttgctggagcaatgggatcgttacgtcgctgaagagatccgc
ctaactgatatcatctctggattcattaccgaagaagacgaagcacctacggcgactcac
gtcggttccgagttacctcaagaagagcttgacgacgaagacgacgacagtgaggaagac
gacgaggaagaagaagaaggcaacaccggcccatgccctgagcaagctaaagagaagttc
gacgccctgcgtgagcactactctctggcaatgactgcgatggctgagcacggttctgac
tcccttgaagtagcgatgatcgttactaaactgtctgagctgttcaaagagttccgcctg
atcccgaagcagtttgacggtctggttcgctctatgcgttccatgatggatcgcgttcgc
gtacaagaacgtctgatcatgaagacctgtgttgaacaagctaagatgccaaagaaaaac
ttcatgaaagtttttgctggtaacgaagctaacgaaacatggttggacgctgaaattgcc
gctggcaaatcatacagtgccgcactgactgcatgtcgtaccgacctgcaacgcagcgtt
gccaaactggaagtgattcaaggcgaaaccggtctttctatctccaagatcaaagacatc
aaccgtcgtatgtctattggtgaggcgaaagctcgccgcgctaagaaagagatggttgaa
gccaacttacgtttggttatctctatcgcgaagaagtacaccaaccgtggtttgcagttc
ttggatttgattcaggaaggtaacatcggcttgatgaaggcggtagataagtttgaatac
cgtcgtggttacaagttctcgacctacgccacttggtggattcgtcaggcgatcactcgc
tccattgccgatcaagctcgtaccattcgtattccggtacacatgatcgaaaccatcaac
aaactgaaccgtatctcgcgccaaatgttgcaagaaatgggccgtgaaccaactcctgaa
gagttggcagaacgtatgttgatgcctgaagataagatccgcaaagtactgaaaatcgcc
aaagagccaatctccatggagacgccaattggtgatgatgaagattctcacttaggtgac
ttcatcgaagatactaccttggcacaaccggtagactccgccacctcggaaagcctgaaa
atggccactaacgaagtattggcaggtctgaccgctcgtgaagcgaaggttctgcggatg
cgttttggtatcgagatgaacactgaccacaccttggaagaggttggtaaacagttcgac
gtaacccgtgagcgtattcgtcagattgaagcgaaggcactgcgtaagctacgccaccca
tctcgctctgaaatcctgaagagcttcctagacgaataa
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