Ferrimonas lipolytica: HER31_16965
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Entry
HER31_16965 CDS
T06529
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
fes
Ferrimonas lipolytica
Pathway
fes03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fes00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HER31_16965 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fes03021
]
HER31_16965 (rpoB)
03400 DNA repair and recombination proteins [BR:
fes03400
]
HER31_16965 (rpoB)
Enzymes [BR:
fes01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HER31_16965 (rpoB)
Transcription machinery [BR:
fes03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HER31_16965 (rpoB)
DNA repair and recombination proteins [BR:
fes03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HER31_16965 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
QIZ78437
UniProt:
A0A6H1UH56
LinkDB
All DBs
Position
3733243..3737268
Genome browser
AA seq
1341 aa
AA seq
DB search
MVYSDFEKKRIRKDFGKRPKVLDVPYLLSIQLDSFQNFLEQDPEGERGLEAAFRSVFPIK
SFSGYASLDYVSYKLGEPVFDVKECQIRGITYSAPLRVKLRMVTLDKENGGAVKDIKEQE
VYMGDMPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKVLYNARVIPYRG
SWLDFEFDPKDNLFVRIDRRRKLPASIILRALDYSTQEILDMFFDKVTFTLKKDKLVMDL
IPERLRGETAVFDIKDNDGKVLVETGRRITARHIRQLEKGGVTELEVPVEYLQGKVSGQD
YVDEATGELIVAANQELTLEDVAKLSQADIKAFDTLYFNELDNGPYMSTTIGVDSTNDRM
EALVEIYRMMRPGEPPTRDAAEALFQNLFFSEDRYDLSTVGRMKFNRRLGRDESTGVGIL
TKEDIVDVMKKIIEIRNGGDEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVRERLS
LGDLDSLMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTR
ERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLATFARTNEYGFLETPYRRVIDGKVT
EEVEYLSAIEEGHYVVAQANAIIDSNSMLSDELVAARHKGESSFVTPDQVQFMDISPQQI
ISVAASLIPFLEHDDANRALMGANMQRQAVPTLKADKPLVGTGIERAVAVDSGVTVVAKR
GGVIDYVDASRIVVKVHEDELVAGEAGIDIYNLTKYTRSNQNTCINQRPVCNVGEIATRG
DVLADGPSTDLGDLALGQNLRVAFMTWNGFNFEDSILLSERVVQEDRLTTIHIQELSCIA
RDTKLGSEEITADIPNVGESALSKLDESGIVYVGAEMKPGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNSVYGTVIDVQVFTRDGVEKDKRAVDIENMQLREAKKDL
TEEFSILENGVYARARNLLLSTGMSEAQLDGMDRAKWLELPLDDEAKQTELEQLAGQHDE
LKADFDKKFETKRRKITQGDDLNPGVQKIVKVYLAVKRRIQPGDKMAGRHGNKGVISTIV
PVEDMPHDEFGQPVDIVLNPLGVPSRMNIGQILEVHLGMAAKGIGDKINAMLEQQREVEE
MRQFIQKAYDIGESQQKVDLSTFSDAEVLRLAKNLKGGMPMATPAFDGAAESEIKELLTL
GDLPDSGQFTLYDGRTGNTFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGG
KAQFGGQRFGEMEVWALQAYGAAYTLQEMLTVKSDDVNGRTQMYKSIVDGNYSMQPGLPE
SFNVVLKEIRSLGINIELDQE
NT seq
4026 nt
NT seq
+upstream
nt +downstream
nt
atggtttactccgatttcgagaaaaaacgcatccgcaaggattttggtaagcgtccaaaa
gtactagacgtaccttacctgctgtcaatccagctggactcgttccaaaacttcctagag
caagacccagaaggtgagcgtggtctggaagctgcattccgcagtgttttcccgatcaag
tccttctctggttatgcttcactggattacgttagctacaagctaggcgaaccagtattt
gacgtaaaagagtgtcagatccgtggcattacttattctgctcctctgcgcgttaagctg
cgcatggtgacactggacaaagagaacggtggcgctgtaaaggatattaaagagcaggaa
gtctacatgggcgatatgccgctcatgaccgaaaacggtactttcgtaattaacggtact
gagcgcgtaatcgtatctcagttgcaccgttctccaggtgtgttcttcgaccacgaccgt
ggtaagactcactcatctggtaaagttttatataacgctcgcgttatcccttaccgtggt
tcttggctggacttcgagttcgatccgaaagacaacttgtttgttcgtatcgaccgtcgt
cgtaaattgccagcgtctatcattctgcgtgctctggattactctactcaagagatccta
gacatgttcttcgacaaggtgaccttcaccttgaagaaagacaagctggtgatggatctg
atcccagagcgtctgcgtggcgaaactgcggtatttgatatcaaagacaacgatggcaag
gttttagttgaaaccggacgtcgtattactgctcgtcatatccgtcaacttgaaaaaggt
ggcgtgactgaactggaagtacctgttgagtacttgcagggcaaagtaagtggtcaagac
tacgttgacgaagcaactggcgagctgatcgttgcggctaaccaagagttaactctggaa
gacgtagctaagctgtctcaagctgatatcaaagcgtttgatactctgtacttcaacgag
ttggacaatggcccgtacatgtccactaccatcggcgttgattcaaccaacgatcgtatg
gaagcgttggtagagatctaccgcatgatgcgcccaggcgagccgccaacccgcgatgct
gccgaagcgctgttccaaaatctgttcttcagtgaagatcgttacgatctgtctactgtt
ggtcgcatgaagttcaaccgtcgtctgggccgtgatgagtccaccggtgttggcattctg
accaaagaagacatcgttgacgtgatgaagaagatcatcgagatccgcaatggcggtgat
gaagtcgatgatatcgatcacttgggcaaccgtcgtatccgttctgttggcgaaatggcc
gaaaaccagttccgtgtaggtctggtacgtgttgagcgtgcagtacgtgagcgtctgtct
ttgggcgatctggattccctgatgcctcaggatctgatcaacgccaagcctatctctgca
gcagttaaagagttcttcggttcttctcagctgtcgcagtttatggatcagaacaacccg
ttgtcagaagtgacccacaagcgtcgtatttcggccttgggtcctggcggcttgacccgt
gagcgtgctggtttcgaagttcgagatgtacacgtaactcactacggtcgtctgtgtcca
attgagacccctgaaggtccaaacattggtttgatcaactctttggcaacctttgctcgt
actaacgagtacggtttcctagagaccccttaccgtcgtgttatcgatggcaaagtgact
gaagaagtagaatacctttctgctatcgaagaaggtcactatgtggtggctcaggctaac
gctatcatcgacagcaacagcatgttgtctgatgagttggttgcagcacgtcacaagggt
gaatcttcattcgttactcctgatcaagttcagttcatggacatctctccacagcagatc
atctctgtggcagcgtctttgattccgttcttggaacacgatgatgctaaccgagccttg
atgggtgcgaacatgcagcgtcaggccgttcctactttgaaggctgataagccattggta
ggtaccggtattgaacgtgcagtagctgttgactccggtgtaaccgttgttgctaagcgt
ggtggtgtaattgattacgtcgatgcttctcgcatcgtggttaaggtacacgaagatgag
ttggttgcaggcgaagccggcatcgacatctacaacttgaccaagtacacccgttctaac
caaaacacctgcattaaccagcgtccagtttgtaacgttggtgaaattgcaactcgcggt
gacgtattggccgatggcccgtctaccgacttgggtgatttggctttgggtcagaacttg
cgcgtagcattcatgacttggaacggtttcaactttgaggattccatcttgctgtccgag
cgagtggttcaggaagatcgcctgacgaccattcacattcaggaactttcctgtattgct
cgtgataccaagcttggctctgaagagatcactgctgatatccctaacgtaggtgagtct
gctctgtctaaattggacgagtctggcatcgtttacgttggcgctgaaatgaaacctggc
gacattctggtaggtaaggtaactccgaaaggcgaaacccagctgactccagaagagaag
ctattgcgtgccatcttcggtgagaaggcgtccgatgttaaggattcctctctgcgtgta
cctaactctgtttacggtaccgttatcgacgttcaagtctttactcgcgatggcgtagaa
aaagacaaacgtgcggttgatatcgagaacatgcagctgcgtgaagcgaagaaggatctg
actgaagagttcagcatccttgagaacggcgtttacgctcgtgctcgcaacctgctgctg
tctaccggtatgagcgaagctcagctggacggtatggatcgcgctaagtggttagaactg
ccactagacgacgaagctaagcaaaccgaacttgagcagttggctggccagcacgatgag
ctgaaagctgacttcgataagaagtttgaaaccaagcgtcgcaagatcacccaaggcgat
gatctgaacccaggtgttcagaagattgttaaggtttaccttgcggttaaacgtcgcatc
cagccaggcgataagatggccggtcgtcacggtaacaaaggtgtaatttccaccatcgtt
cctgttgaagacatgccacacgatgagttcggccagccggtcgacatcgtacttaacccg
ctgggtgtaccgtcgcgtatgaacatcggtcagatccttgaagttcacttgggtatggcc
gctaagggaattggtgacaagatcaacgccatgctggaacaacagcgtgaagttgaagag
atgcgccagtttatccagaaagcatacgacatcggtgagtcgcagcagaaagtagacctg
tctaccttctctgacgccgaagtgctgcgtctggctaaaaacctgaagggcggtatgcca
atggctacccctgcgttcgacggtgctgctgagtctgaaatcaaagagctgttgacccta
ggtgacctgccggattccggtcagttcactttgtacgatggccgtactggtaacaccttc
gaacgtccggtaaccgttggttacatgtacatgctgaagttgaaccacttggttgatgac
aagatgcacgcgcgttctaccggttcttacagcttggttactcagcagccgctgggtggt
aaagcacagttcggtggtcagcgtttcggtgagatggaagtgtgggccctacaggcctac
ggtgcagcctacaccctgcaagagatgttaaccgtgaagtccgatgacgtgaacggccgt
actcagatgtataagagcatcgtggacggaaactactcaatgcagccaggcttgccagaa
tccttcaacgtagtgttgaaagagatccgctcactgggtatcaacatcgagttggaccag
gaataa
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